5F5L

The structure of monooxygenase KstA11 in the biosynthetic pathway of kosinostatin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.68 Å
  • R-Value Free: 0.177 
  • R-Value Work: 0.129 
  • R-Value Observed: 0.131 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Hydroxyl regioisomerization of anthracycline catalyzed by a four-enzyme cascade

Zhang, Z.Gong, Y.-K.Zhou, Q.Hu, Y.Ma, H.-M.Chen, Y.-S.Igarashi, Y.Pan, L.Tang, G.-L.

(2017) Proc Natl Acad Sci U S A 114: 1554-1559

  • DOI: https://doi.org/10.1073/pnas.1610097114
  • Primary Citation of Related Structures:  
    5F5L, 5F5N

  • PubMed Abstract: 

    Ranking among the most effective anticancer drugs, anthracyclines represent an important family of aromatic polyketides generated by type II polyketide synthases (PKSs). After formation of polyketide cores, the post-PKS tailoring modifications endow the scaffold with various structural diversities and biological activities. Here we demonstrate an unprecedented four-enzyme-participated hydroxyl regioisomerization process involved in the biosynthesis of kosinostatin. First, KstA15 and KstA16 function together to catalyze a cryptic hydroxylation of the 4-hydroxyl-anthraquinone core, yielding a 1,4-dihydroxyl product, which undergoes a chemically challenging asymmetric reduction-dearomatization subsequently acted by KstA11; then, KstA10 catalyzes a region-specific reduction concomitant with dehydration to afford the 1-hydroxyl anthraquinone. Remarkably, the shunt product identifications of both hydroxylation and reduction-dehydration reactions, the crystal structure of KstA11 with bound substrate and cofactor, and isotope incorporation experiments reveal mechanistic insights into the redox dearomatization and rearomatization steps. These findings provide a distinguished tailoring paradigm for type II PKS engineering.


  • Organizational Affiliation

    State Key Laboratory of Bio-organic and Natural Products Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai 200032, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Monooxygenase290Micromonospora okiiMutation(s): 0 
UniProt
Find proteins for A0A023GUL3 (Micromonospora okii)
Explore A0A023GUL3 
Go to UniProtKB:  A0A023GUL3
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A023GUL3
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.68 Å
  • R-Value Free: 0.177 
  • R-Value Work: 0.129 
  • R-Value Observed: 0.131 
  • Space Group: P 4 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 93.748α = 90
b = 93.748β = 90
c = 71.182γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data processing
Cootmodel building
PHENIXphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Basic Research Program of ChinaChina2013CB836900
a Shanghai Rising Star Scholar awardChina13QA1404300

Revision History  (Full details and data files)

  • Version 1.0: 2016-12-21
    Type: Initial release
  • Version 1.1: 2017-02-08
    Changes: Database references
  • Version 1.2: 2017-03-01
    Changes: Database references