4UE0

Structure of the bovine atadenovirus type 4 fibre head protein

PDB DOI: https://doi.org/10.2210/pdb4UE0/pdb

Classification: VIRAL PROTEIN
Organism(s): Bovine adenovirus 4
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2014-12-14 Released: 2015-06-03
Deposition Author(s): Nguyen, T.H., van Raaij, M.J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.17 Å
R-Value Free: 0.146
R-Value Work: 0.116
R-Value Observed: 0.117

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of the fibre head domain of bovine adenovirus 4, a ruminant atadenovirus.

Nguyen, T.H., Vidovszky, M.Z., Ballmann, M.Z., Sanz-Gaitero, M., Singh, A.K., Harrach, B., Benko, M., van Raaij, M.J.

(2015) Virol J 12: 81-81

PubMed: 25994880 Search on PubMedSearch on PubMed Central
DOI: https://doi.org/10.1186/s12985-015-0309-1
Primary Citation of Related Structures:
4UE0

PubMed Abstract:
In adenoviruses, primary host cell recognition is generally performed by the head domains of their homo-trimeric fibre proteins. This first interaction is reversible. A secondary, irreversible interaction subsequently takes place via other adenovirus capsid proteins and leads to a productive infection. Although many fibre head structures are known for human mastadenoviruses, not many animal adenovirus fibre head structures have been determined, especially not from those belonging to adenovirus genera other than Mastadenovirus.

Organizational Affiliation

Departamento de Estructura de Macromoleculas, Centro Nacional de Biotecnologia (CNB-CSIC), calle Darwin 3, 28049, Madrid, Spain. th.nguyen@cnb.csic.es.

Macromolecule Content

Total Structure Weight: 40.8 kDa
Atom Count: 3,289
Modelled Residue Count: 345
Deposited Residue Count: 366
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
FIBER	A, B, C	122	Bovine adenovirus 4	Mutation(s): 0
UniProt
Find proteins for Q997H2 (Bovine adenovirus 4) Explore Q997H2 Go to UniProtKB: Q997H2
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q997H2
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CO3 Query on CO3 Download Ideal Coordinates CCD File SDF format, chain D [auth B] MOL2 format, chain D [auth B]	D [auth B]	CARBONATE ION C O₃ BVKZGUZCCUSVTD-UHFFFAOYSA-L		Interactions Focus chain D [auth B] Interactions & Density Focus chain D [auth B]
SCN Query on SCN Download Ideal Coordinates CCD File SDF format, chain E [auth C] MOL2 format, chain E [auth C]	E [auth C]	THIOCYANATE ION C N S ZMZDMBWJUHKJPS-UHFFFAOYSA-M		Interactions Focus chain E [auth C] Interactions & Density Focus chain E [auth C]