Murine IRGa6 bound to Toxoplasma ROP5C, a pseudokinase GDI
Reese, M.L., Shah, N., Boothroyd, J.C.To be published.
Experimental Data Snapshot
Starting Models: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Rhoptry protein 5 C | 371 | Toxoplasma gondii type I | Mutation(s): 0  Gene Names: ROP5C | ||
UniProt | |||||
Find proteins for I6ZQR7 (Toxoplasma gondii type I) Explore I6ZQR7  Go to UniProtKB:  I6ZQR7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | I6ZQR7 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Interferon-inducible GTPase 1 | 423 | Mus musculus | Mutation(s): 0  Gene Names: Iigp1, Irga6 EC: 3.6.5 | ||
UniProt | |||||
Find proteins for Q9QZ85 (Mus musculus) Explore Q9QZ85  Go to UniProtKB:  Q9QZ85 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9QZ85 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
GDP Query on GDP | L [auth B] | GUANOSINE-5'-DIPHOSPHATE C10 H15 N5 O11 P2 QGWNDRXFNXRZMB-UUOKFMHZSA-N | |||
ADP Query on ADP | C [auth A] | ADENOSINE-5'-DIPHOSPHATE C10 H15 N5 O10 P2 XTWYTFMLZFPYCI-KQYNXXCUSA-N | |||
EDO Query on EDO | E [auth A] F [auth A] G [auth A] H [auth A] I [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
MG Query on MG | D [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 53.4 | α = 104.7 |
b = 53.7 | β = 95.3 |
c = 86.8 | γ = 111 |
Software Name | Purpose |
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PHENIX | refinement |
XSCALE | data scaling |
PDB_EXTRACT | data extraction |
PHASER | phasing |