Download MendeleyStructure of E. coli PFK2 mutant Y23D
Pereira, H.M., Caniuguir, A., Baez, M., Cabrera, R., Garratt, R.C., Babul, J.To be published.
3UQE
Crystal structure of the Phosphofructokinase-2 mutant Y23D from Escherichia coli
- PDB DOI: https://doi.org/10.2210/pdb3UQE/pdb
- Classification: TRANSFERASE
- Organism(s): Escherichia coli K-12
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2011-11-20 Released: 2012-11-21
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.253
- R-Value Work: 0.219
- R-Value Observed: 0.220
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| 6-phosphofructokinase isozyme 2 | 309 | Escherichia coli K-12 | Mutation(s): 1 Gene Names: b1723, JW5280, PFK2, pfkB EC: 2.7.1.11 |  | |
UniProt | |||||
Find proteins for P06999 (Escherichia coli (strain K12)) Explore P06999 Go to UniProtKB: P06999 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P06999 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ATP Query on ATP | C [auth A], J [auth B] | ADENOSINE-5'-TRIPHOSPHATE C10 H16 N5 O13 P3 ZKHQWZAMYRWXGA-KQYNXXCUSA-N |  | ||
| POP Query on POP | F [auth A], H [auth B] | PYROPHOSPHATE 2- H2 O7 P2 XPPKVPWEQAFLFU-UHFFFAOYSA-L |  | ||
| MG Query on MG | D [auth A], E [auth A], G [auth B], I [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.253
- R-Value Work: 0.219
- R-Value Observed: 0.220
- Space Group: P 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 43.838 | α = 90 |
| b = 89.123 | β = 90 |
| c = 175.908 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHASER | phasing |
| DM | phasing |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| MAR345dtb | data collection |
| MOSFLM | data reduction |
| SCALA | data scaling |
Entry History
Deposition Data
- Released Date: 2012-11-21 Deposition Author(s): Pereira, H.M., Caniuguir, A., Baez, M., Cabrera, R., Garatt, R.C., Babul, J.
Revision History (Full details and data files)
- Version 1.0: 2012-11-21
Type: Initial release - Version 1.1: 2023-09-13
Changes: Data collection, Database references, Derived calculations, Refinement description
