5VYP | pdb_00005vyp


PIO: [(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate

PIO is a Ligand Of Interest in 5VYP designated by the RCSB
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Best-fitted instance in this entry
Other instances in this entry
Best-fitted instance in this entry
Best-fitted PDB instances with same target (top 5)
Best-fitted instance in this entry
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
5VYP_PIO_N_101 67% 44% 0.158 0.9711.17 0.91 6 240100%1
5VYP_PIO_R_101 67% 42% 0.158 0.9711.18 0.97 6 340100%1
5VYP_PIO_M_101 63% 42% 0.156 0.9571.17 0.99 6 230100%1
5VYP_PIO_E_101 61% 43% 0.174 0.9681.17 0.93 6 310100%1
5VYP_PIO_B_101 60% 41% 0.177 0.9661.18 1.04 6 230100%1
5VYP_PIO_C_101 59% 42% 0.175 0.9631.17 0.97 6 380100%1
5VYP_PIO_J_101 59% 42% 0.179 0.9671.17 0.99 6 350100%1
5VYP_PIO_D_101 59% 42% 0.173 0.9591.18 0.98 6 360100%1
5VYP_PIO_T_101 57% 43% 0.186 0.9681.16 0.97 6 240100%1
5VYP_PIO_A_101 57% 42% 0.18 0.9611.17 0.98 6 220100%1
5VYP_PIO_U_101 57% 42% 0.185 0.9641.18 0.97 6 330100%1
5VYP_PIO_X_101 56% 41% 0.17 0.9471.16 1.03 6 340100%1
5VYP_PIO_L_101 54% 41% 0.167 0.9351.18 1.03 6 330100%1
5VYP_PIO_H_101 53% 42% 0.191 0.9591.19 0.95 6 310100%1
5VYP_PIO_W_101 53% 40% 0.181 0.9481.2 1.06 6 360100%1
5VYP_PIO_S_101 53% 39% 0.191 0.9571.17 1.13 6 320100%1
5VYP_PIO_I_101 53% 43% 0.185 0.951.17 0.93 6 320100%1
5VYP_PIO_G_101 52% 42% 0.196 0.9591.18 0.97 6 220100%1
5VYP_PIO_F_101 52% 42% 0.193 0.9541.17 0.98 6 350100%1
5VYP_PIO_P_101 51% 43% 0.2 0.961.17 0.96 6 220100%1
5VYP_PIO_Q_101 50% 42% 0.197 0.9531.16 0.98 6 210100%1
5VYP_PIO_O_101 50% 42% 0.2 0.9561.18 0.99 6 350100%1
5VYP_PIO_V_101 50% 42% 0.201 0.9571.17 0.98 6 270100%1
5VYP_PIO_K_101 47% 43% 0.194 0.9371.17 0.94 6 230100%1
4CQK_PIO_N_1048 96% 48% 0.068 0.9830.94 0.97 2 230100%1
6CS9_PIO_B_101 58% 42% 0.131 0.9111.21 0.96 6 260100%1
4KFM_PIO_A_401 51% 57% 0.078 0.8910.65 0.85 - -0066%1
5KUM_PIO_A_401 34% 39% 0.159 0.9280.74 1.52 - 80055%1
3SPG_PIO_A_400 33% 38% 0.214 0.9361.16 1.18 2 40081%1