Ligand validation:4Y28

LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE

LMG is a Ligand Of Interest in 4Y28 designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
4Y28_LMG_J_5001	24%	41%	0.221	0.853	0.88	1.44	2	7	7	0	100%	1
4Y28_LMG_4_4801	14%	35%	0.25	0.867	1.04	1.63	2	10	4	0	64%	0.6364
4Y28_LMG_F_5001	9%	29%	0.27	0.869	1.24	1.72	3	6	7	0	42%	0.4182
4Y28_LMG_G_2021	6%	46%	0.286	0.759	0.95	1.16	2	5	19	0	75%	0.7455
4Y28_LMG_F_5002	5%	41%	0.39	0.85	1.07	1.27	2	5	5	0	67%	0.6727
4Y28_LMG_2_2802	3%	40%	0.407	0.809	1.08	1.33	2	7	5	0	64%	0.6364
4Y28_LMG_B_5005	2%	46%	0.309	0.606	1.08	1.04	2	3	3	0	69%	0.6909
5L8R_LMG_F_304	44%	47%	0.17	0.925	0.97	1.09	4	2	7	0	85%	0.8545
7DKZ_LMG_4_319	38%	41%	0.201	0.919	0.88	1.46	3	8	0	0	91%	0.9091
6ZXS_LMG_F_306	29%	47%	0.234	0.917	0.97	1.11	3	4	4	0	85%	0.8545
4RKU_LMG_J_5001	8%	44%	0.326	0.86	1.11	1.11	2	2	3	0	64%	0.6364
5V2C_LMG_B_621	91%	33%	0.074	0.972	1.09	1.67	4	8	0	0	93%	0.9273
7YQ2_LMG_d_412	78%	54%	0.098	0.955	0.9	0.89	2	3	0	0	93%	0.9273
5B5E_LMG_j_101	74%	45%	0.101	0.943	0.98	1.16	4	7	0	0	93%	0.9273
5ZZN_LMG_D_412	72%	44%	0.099	0.95	1.05	1.14	3	3	0	0	85%	0.8545
5B66_LMG_j_101	70%	48%	0.093	0.943	1	1.02	3	6	0	0	82%	0.8182

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.