Ligand validation:4Y28

CLA: CHLOROPHYLL A

CLA is a Ligand Of Interest in 4Y28 designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
4Y28_CLA_B_1203	47%	10%	0.221	0.964	2.29	2.15	15	15	3	2	100%	1
4Y28_CLA_B_1240	47%	10%	0.189	0.93	2.33	2.13	15	18	8	2	100%	1
4Y28_CLA_1_1012	46%	7%	0.161	0.939	2.48	2.47	16	16	15	3	77%	0.7692
4Y28_CLA_F_1302	46%	6%	0.161	0.937	2.6	2.53	14	14	6	3	77%	0.7692
4Y28_CLA_B_1202	44%	9%	0.221	0.952	2.31	2.3	15	16	5	2	100%	1
4Y28_CLA_A_1136	44%	8%	0.17	0.922	2.54	2.34	16	18	6	3	86%	0.8615
4Y28_CLA_B_1201	43%	6%	0.177	0.941	2.71	2.42	16	17	1	3	77%	0.7692
4Y28_CLA_B_1206	42%	9%	0.212	0.934	2.35	2.28	15	18	5	2	100%	1
4Y28_CLA_A_1121	42%	7%	0.175	0.921	2.57	2.43	16	17	3	3	85%	0.8462
4Y28_CLA_A_1128	40%	10%	0.207	0.921	2.34	2.17	15	16	10	3	100%	1
4Y28_CLA_4_4012	40%	11%	0.209	0.922	2.09	2.29	15	19	25	3	100%	1
4Y28_CLA_A_1120	39%	9%	0.181	0.9	2.43	2.25	15	15	1	3	92%	0.9231
4Y28_CLA_B_1235	38%	10%	0.218	0.921	2.33	2.22	15	15	1	2	100%	1
4Y28_CLA_B_1238	38%	10%	0.223	0.926	2.35	2.12	16	14	9	3	100%	1
4Y28_CLA_2_2003	38%	7%	0.164	0.893	2.31	2.63	14	17	25	3	85%	0.8462
4Y28_CLA_B_1226	38%	10%	0.229	0.932	2.29	2.2	15	15	5	3	100%	1
4Y28_CLA_B_1219	38%	9%	0.205	0.921	2.46	2.21	16	14	2	3	92%	0.9231
4Y28_CLA_1_1003	37%	8%	0.186	0.911	2.35	2.49	17	21	28	3	85%	0.8462
4Y28_CLA_G_1002	37%	6%	0.193	0.942	2.71	2.51	16	14	21	3	71%	0.7077
4Y28_CLA_B_1221	36%	9%	0.238	0.935	2.35	2.25	15	18	11	3	100%	1
4Y28_CLA_4_4009	36%	8%	0.199	0.934	2.39	2.51	15	14	4	3	77%	0.7692
4Y28_CLA_A_1119	36%	11%	0.229	0.923	2.32	2.11	15	16	6	3	100%	1
4Y28_CLA_B_1207	36%	10%	0.229	0.923	2.34	2.19	16	16	8	2	100%	1
4Y28_CLA_A_1122	36%	11%	0.229	0.922	2.34	2.1	15	15	2	3	100%	1
4Y28_CLA_B_1223	35%	10%	0.216	0.907	2.29	2.21	15	16	3	2	100%	1
4Y28_CLA_B_1230	35%	7%	0.203	0.913	2.48	2.44	14	16	8	3	89%	0.8923
4Y28_CLA_A_1125	35%	9%	0.218	0.921	2.4	2.25	15	16	2	3	92%	0.9231
4Y28_CLA_G_1001	35%	7%	0.165	0.879	2.34	2.61	15	20	26	3	85%	0.8462
4Y28_CLA_2_2004	35%	10%	0.219	0.906	2.26	2.18	14	16	15	3	100%	1
4Y28_CLA_B_1208	34%	7%	0.193	0.905	2.6	2.38	16	15	4	3	85%	0.8462
4Y28_CLA_4_4005	34%	9%	0.212	0.908	2.19	2.5	14	20	15	3	92%	0.9231
4Y28_CLA_A_1102	33%	6%	0.195	0.918	2.73	2.45	15	14	3	3	77%	0.7692
4Y28_CLA_B_1204	33%	8%	0.203	0.912	2.59	2.32	15	14	8	2	85%	0.8462
4Y28_CLA_A_1137	33%	8%	0.222	0.931	2.58	2.26	16	15	2	3	85%	0.8462
4Y28_CLA_B_1220	33%	11%	0.234	0.915	2.34	2.01	16	16	9	2	100%	1
4Y28_CLA_B_1239	33%	10%	0.239	0.919	2.34	2.16	16	15	4	3	100%	1
4Y28_CLA_B_1211	33%	10%	0.227	0.905	2.31	2.24	15	19	6	3	100%	1
4Y28_CLA_B_1205	33%	11%	0.263	0.942	2.32	2.09	15	17	5	3	100%	1
4Y28_CLA_2_2009	32%	7%	0.185	0.902	2.5	2.53	16	16	11	3	77%	0.7692
4Y28_CLA_A_1101	32%	10%	0.229	0.905	2.33	2.24	15	15	6	2	100%	1
4Y28_CLA_2_2008	31%	6%	0.2	0.911	2.37	2.96	15	23	10	3	77%	0.7692
4Y28_CLA_4_4003	30%	11%	0.23	0.895	2.17	2.22	16	17	3	3	100%	1
4Y28_CLA_1_1007	30%	6%	0.194	0.91	2.59	2.64	15	15	9	3	71%	0.7077
4Y28_CLA_B_1209	30%	6%	0.217	0.932	2.94	2.38	15	12	2	3	71%	0.7077
4Y28_CLA_A_1138	29%	11%	0.256	0.917	2.37	2.05	15	17	3	3	100%	1
4Y28_CLA_A_1109	29%	10%	0.224	0.883	2.34	2.13	15	15	7	3	100%	1
4Y28_CLA_B_1227	29%	10%	0.234	0.893	2.33	2.18	16	17	6	3	100%	1
4Y28_CLA_A_1139	29%	10%	0.248	0.906	2.34	2.15	16	16	4	3	100%	1
4Y28_CLA_B_1021	29%	9%	0.249	0.907	2.34	2.25	14	17	6	3	100%	1
4Y28_CLA_A_1022	29%	10%	0.239	0.896	2.35	2.18	15	17	7	2	100%	1
4Y28_CLA_1_1004	28%	11%	0.234	0.89	2.14	2.25	15	16	21	3	100%	1
4Y28_CLA_B_1216	28%	10%	0.245	0.901	2.34	2.16	16	16	6	3	100%	1
4Y28_CLA_A_1124	28%	7%	0.233	0.916	2.58	2.36	16	16	4	3	85%	0.8462
4Y28_CLA_A_1133	28%	7%	0.228	0.908	2.56	2.42	16	17	3	2	85%	0.8462
4Y28_CLA_B_1229	27%	10%	0.26	0.909	2.36	2.14	16	17	5	3	100%	1
4Y28_CLA_A_1111	27%	9%	0.24	0.902	2.44	2.21	15	17	7	2	92%	0.9231
4Y28_CLA_B_1232	27%	8%	0.222	0.897	2.58	2.29	16	14	2	3	85%	0.8462
4Y28_CLA_A_1103	27%	10%	0.246	0.893	2.31	2.21	16	17	6	2	100%	1
4Y28_CLA_1_1014	27%	6%	0.175	0.872	2.66	2.51	15	15	13	3	71%	0.7077
4Y28_CLA_B_1023	26%	10%	0.24	0.885	2.34	2.18	15	19	4	3	100%	1
4Y28_CLA_1_1002	26%	6%	0.188	0.883	2.63	2.58	14	15	15	3	71%	0.7077
4Y28_CLA_A_1116	26%	8%	0.251	0.908	2.45	2.35	15	15	5	3	92%	0.9231
4Y28_CLA_L_1502	26%	9%	0.233	0.888	2.26	2.33	15	17	12	3	92%	0.9231
4Y28_CLA_A_1129	26%	6%	0.236	0.919	2.7	2.52	15	16	1	2	77%	0.7692
4Y28_CLA_B_1236	25%	7%	0.239	0.905	2.58	2.35	15	15	5	2	85%	0.8462
4Y28_CLA_B_1218	25%	10%	0.253	0.89	2.34	2.22	16	16	7	3	100%	1
4Y28_CLA_1_1005	25%	8%	0.207	0.87	2.29	2.5	15	19	8	3	85%	0.8462
4Y28_CLA_B_1012	25%	10%	0.272	0.908	2.33	2.22	15	17	6	2	100%	1
4Y28_CLA_A_1126	25%	10%	0.282	0.917	2.35	2.17	16	16	9	3	100%	1
4Y28_CLA_A_1131	25%	10%	0.297	0.932	2.35	2.11	16	14	3	3	100%	1
4Y28_CLA_B_1210	24%	10%	0.281	0.914	2.31	2.15	15	17	7	3	100%	1
4Y28_CLA_A_1132	24%	10%	0.284	0.917	2.35	2.11	16	17	4	3	100%	1
4Y28_CLA_A_1130	24%	6%	0.23	0.901	2.74	2.46	16	14	3	2	77%	0.7692
4Y28_CLA_2_2005	24%	8%	0.253	0.91	2.46	2.3	14	17	15	3	85%	0.8462
4Y28_CLA_A_1237	23%	8%	0.294	0.935	2.43	2.34	15	17	4	3	92%	0.9231
4Y28_CLA_1_1001	23%	9%	0.204	0.841	2.25	2.37	15	15	43	3	92%	0.9231
4Y28_CLA_B_1231	23%	9%	0.228	0.865	2.48	2.16	16	16	2	3	92%	0.9231
4Y28_CLA_A_1140	23%	10%	0.28	0.904	2.36	2.11	16	16	3	3	100%	1
4Y28_CLA_A_1106	22%	9%	0.277	0.898	2.36	2.23	16	16	5	3	100%	1
4Y28_CLA_B_1225	22%	10%	0.297	0.918	2.35	2.15	16	15	3	3	100%	1
4Y28_CLA_B_1224	22%	10%	0.299	0.919	2.32	2.21	15	16	5	3	100%	1
4Y28_CLA_3_3013	22%	7%	0.191	0.859	2.74	2.24	16	14	21	3	71%	0.7077
4Y28_CLA_B_1213	22%	9%	0.231	0.861	2.45	2.22	14	15	2	2	92%	0.9231
4Y28_CLA_4_4004	22%	10%	0.245	0.875	2.22	2.28	14	17	16	3	92%	0.9231
4Y28_CLA_A_1013	22%	10%	0.316	0.934	2.33	2.14	16	17	6	3	100%	1
4Y28_CLA_A_1118	22%	6%	0.225	0.893	2.89	2.42	14	13	3	3	71%	0.7077
4Y28_CLA_4_4017	22%	11%	0.268	0.884	2.13	2.22	16	17	10	3	100%	1
4Y28_CLA_A_1112	21%	10%	0.25	0.863	2.32	2.14	16	16	8	2	100%	1
4Y28_CLA_A_1104	21%	10%	0.282	0.892	2.35	2.12	16	15	3	3	100%	1
4Y28_CLA_B_1215	20%	9%	0.303	0.924	2.48	2.24	16	15	0	2	92%	0.9231
4Y28_CLA_F_1301	20%	7%	0.23	0.89	2.72	2.39	13	11	3	3	69%	0.6923
4Y28_CLA_L_1501	20%	7%	0.217	0.861	2.47	2.57	16	20	11	3	77%	0.7692
4Y28_CLA_B_1228	20%	9%	0.256	0.873	2.46	2.17	15	15	1	3	92%	0.9231
4Y28_CLA_2_2006	20%	8%	0.227	0.856	2.45	2.42	14	15	17	3	85%	0.8462
4Y28_CLA_B_1217	19%	6%	0.271	0.922	2.91	2.35	16	12	1	3	71%	0.7077
4Y28_CLA_3_3002	19%	6%	0.241	0.886	2.6	2.58	16	18	4	3	71%	0.7077
4Y28_CLA_3_3005	19%	7%	0.247	0.867	2.32	2.6	15	17	13	3	85%	0.8462
4Y28_CLA_A_1135	19%	6%	0.275	0.907	2.68	2.53	15	15	4	2	78%	0.7846
4Y28_CLA_A_1105	18%	6%	0.249	0.878	2.7	2.44	16	18	1	3	78%	0.7846
4Y28_CLA_3_3012	18%	7%	0.223	0.853	2.45	2.65	15	16	28	3	77%	0.7692
4Y28_CLA_G_1003	18%	9%	0.242	0.842	2.28	2.32	15	19	21	3	92%	0.9231
4Y28_CLA_2_2001	18%	8%	0.287	0.887	2.2	2.57	16	21	26	3	92%	0.9231
4Y28_CLA_A_1151	18%	6%	0.24	0.866	2.77	2.46	16	13	3	3	77%	0.7692
4Y28_CLA_3_3017	18%	7%	0.242	0.879	2.68	2.3	15	13	5	3	71%	0.7077
4Y28_CLA_A_1127	17%	10%	0.332	0.916	2.35	2.17	15	16	5	3	100%	1
4Y28_CLA_A_1115	17%	6%	0.242	0.874	2.91	2.25	16	12	3	3	71%	0.7077
4Y28_CLA_2_2012	17%	9%	0.292	0.896	2.29	2.38	15	18	21	3	85%	0.8462
4Y28_CLA_A_1110	16%	8%	0.272	0.868	2.59	2.29	16	16	7	3	85%	0.8462
4Y28_CLA_A_1107	15%	10%	0.295	0.861	2.35	2.18	16	16	3	3	100%	1
4Y28_CLA_A_1117	15%	10%	0.365	0.929	2.34	2.13	15	15	3	2	100%	1
4Y28_CLA_A_1134	15%	7%	0.274	0.861	2.58	2.34	15	15	1	2	85%	0.8462
4Y28_CLA_A_1108	15%	6%	0.294	0.905	2.93	2.3	16	14	3	3	71%	0.7077
4Y28_CLA_2_2002	15%	7%	0.209	0.817	2.59	2.46	15	16	21	3	71%	0.7077
4Y28_CLA_4_4001	14%	9%	0.274	0.84	2.2	2.44	15	19	20	3	92%	0.9231
4Y28_CLA_A_1123	14%	9%	0.312	0.865	2.36	2.22	16	17	4	2	100%	1
4Y28_CLA_B_1222	14%	10%	0.303	0.855	2.33	2.2	15	18	5	3	100%	1
4Y28_CLA_4_4008	14%	5%	0.254	0.853	2.53	2.93	14	18	8	3	71%	0.7077
4Y28_CLA_B_1212	14%	7%	0.264	0.838	2.56	2.41	16	17	5	3	85%	0.8462
4Y28_CLA_1_1006	13%	7%	0.244	0.831	2.49	2.59	17	17	10	3	77%	0.7692
4Y28_CLA_A_1114	13%	6%	0.29	0.889	2.91	2.36	15	13	2	3	71%	0.7077
4Y28_CLA_4_4007	13%	9%	0.295	0.852	2.18	2.54	13	15	7	3	92%	0.9231
4Y28_CLA_3_3003	13%	9%	0.248	0.803	2.26	2.44	16	17	31	3	92%	0.9231
4Y28_CLA_B_1234	13%	8%	0.296	0.852	2.48	2.32	16	18	7	3	92%	0.9231
4Y28_CLA_3_3007	13%	7%	0.233	0.812	2.55	2.57	16	17	6	3	77%	0.7692
4Y28_CLA_3_3004	13%	9%	0.262	0.813	2.24	2.37	16	14	14	3	92%	0.9231
4Y28_CLA_4_4002	12%	6%	0.245	0.817	2.44	2.7	14	19	5	3	77%	0.7692
4Y28_CLA_A_1113	12%	6%	0.273	0.855	2.91	2.32	15	14	2	2	71%	0.7077
4Y28_CLA_B_1214	12%	8%	0.299	0.843	2.47	2.34	15	17	1	3	91%	0.9077
4Y28_CLA_3_3006	12%	6%	0.252	0.817	2.5	2.73	16	17	28	3	77%	0.7692
4Y28_CLA_1_1011	11%	7%	0.286	0.849	2.47	2.52	15	17	11	3	77%	0.7692
4Y28_CLA_2_2007	11%	9%	0.301	0.835	2.32	2.26	15	15	20	3	92%	0.9231
4Y28_CLA_4_4006	11%	7%	0.242	0.8	2.43	2.51	14	18	21	3	77%	0.7692
4Y28_CLA_3_3001	11%	7%	0.311	0.868	2.49	2.57	15	15	23	3	77%	0.7692
4Y28_CLA_3_3010	10%	9%	0.292	0.817	2.24	2.39	14	16	22	3	92%	0.9231
4Y28_CLA_1_1008	9%	6%	0.249	0.797	2.63	2.58	15	16	25	3	71%	0.7077
4Y28_CLA_2_2019	9%	3%	0.18	0.771	3.17	3.36	12	15	0	3	42%	0.412
4Y28_CLA_H_1000	9%	6%	0.308	0.85	2.9	2.34	15	12	4	3	71%	0.7077
4Y28_CLA_3_3018	7%	6%	0.313	0.807	2.5	2.65	17	18	14	3	77%	0.7692
4Y28_CLA_J_1302	6%	6%	0.354	0.841	2.74	2.6	16	17	7	3	77%	0.7692
4Y28_CLA_4_4016	6%	6%	0.299	0.791	2.75	2.42	14	17	18	3	71%	0.7077
4Y28_CLA_L_1503	5%	7%	0.374	0.831	2.53	2.55	15	17	11	3	77%	0.7692
4Y28_CLA_K_1001	5%	5%	0.346	0.796	2.68	2.76	15	14	6	3	71%	0.7077
4Y28_CLA_1_1013	4%	6%	0.339	0.767	2.7	2.68	16	12	15	3	71%	0.7077
4Y28_CLA_2_2016	3%	4%	0.304	0.666	2.57	3.36	15	21	19	3	77%	0.7692
4Y28_CLA_3_3008	3%	4%	0.463	0.835	2.52	3.21	14	19	9	3	74%	0.7385
4Y28_CLA_3_3019	0%	2%	0.594	0.294	3.36	3.39	13	14	1	3	42%	0.412
5L8R_CLA_B_832	74%	26%	0.122	0.971	1.36	1.8	5	9	6	3	89%	0.8923
7DKZ_CLA_A_808	72%	29%	0.153	0.977	1.36	1.59	8	11	4	1	100%	1
4XK8_CLA_b_839	59%	13%	0.179	0.963	2.05	2.07	13	17	0	3	100%	1
6ZXS_CLA_1_5012	58%	17%	0.12	0.952	1.62	2.11	9	13	2	1	71%	0.7077
4RKU_CLA_B_9010	53%	9%	0.194	0.956	2.17	2.45	14	21	14	3	100%	1
5V2C_CLA_B_604	99%	16%	0.049	0.986	1.64	2.25	13	20	0	1	100%	1
5B66_CLA_D_402	98%	13%	0.061	0.981	1.9	2.23	16	21	0	0	100%	1
7YQ7_CLA_D_401	98%	9%	0.059	0.979	2.09	2.56	19	28	0	0	100%	1
5ZZN_CLA_A_406	97%	17%	0.064	0.979	1.65	2.13	17	21	0	0	100%	1
8IRB_CLA_b_608	97%	8%	0.069	0.982	2.01	2.72	16	30	0	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.

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4Y28

CLA: CHLOROPHYLL A

CLA is a Ligand Of Interest in 4Y28 designated by the RCSB