GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 3AB3 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
3AB3_GDP_C_402 | 72% | 19% | 0.158 | 0.982 | 1.51 | 1.92 | 3 | 11 | 1 | 0 | 100% | 1 |
3AB3_GDP_A_401 | 72% | 19% | 0.163 | 0.987 | 1.57 | 1.87 | 4 | 8 | 0 | 0 | 100% | 1 |
1ZCB_GDP_A_378 | 92% | 27% | 0.078 | 0.968 | 1.5 | 1.42 | 4 | 5 | 0 | 0 | 100% | 1 |
3CX6_GDP_A_775 | 73% | 34% | 0.153 | 0.98 | 1.35 | 1.24 | 4 | 2 | 2 | 0 | 100% | 1 |
3CX7_GDP_A_875 | 72% | 28% | 0.156 | 0.98 | 1.58 | 1.32 | 4 | 2 | 0 | 0 | 100% | 1 |
1RRG_GDP_A_183 | 100% | 17% | 0.036 | 0.997 | 2.05 | 1.56 | 7 | 3 | 0 | 0 | 100% | 1 |
5YMX_GDP_A_301 | 100% | 54% | 0.038 | 0.994 | 0.92 | 0.85 | 1 | - | 2 | 0 | 100% | 1 |
8CNJ_GDP_B_201 | 100% | 56% | 0.04 | 0.992 | 0.91 | 0.77 | 1 | - | 0 | 0 | 100% | 1 |
5UQW_GDP_A_1002 | 100% | 47% | 0.04 | 0.99 | 1.04 | 1.01 | 2 | 2 | 0 | 0 | 100% | 1 |
2PHN_GDP_A_2696 | 100% | 44% | 0.046 | 0.99 | 1.08 | 1.08 | 1 | 2 | 0 | 0 | 100% | 1 |