D5M: 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
D5M is a Ligand Of Interest in 1LGN designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
| 1LGN_D5M_E_401 | 84% | 65% | 0.084 | 0.952 | 0.51 | 0.69 | - | - | 2 | 0 | 100% | 1 |
| 1LGN_D5M_D_401 | 83% | 53% | 0.087 | 0.952 | 0.72 | 0.94 | - | 2 | 2 | 0 | 100% | 1 |
| 1LGN_D5M_A_401 | 78% | 59% | 0.097 | 0.943 | 0.67 | 0.76 | - | - | 0 | 0 | 100% | 1 |
| 1LGN_D5M_C_401 | 76% | 57% | 0.102 | 0.943 | 0.71 | 0.81 | - | 1 | 0 | 0 | 100% | 1 |
| 1LGN_D5M_B_401 | 74% | 62% | 0.107 | 0.94 | 0.62 | 0.7 | - | - | 0 | 0 | 100% | 1 |
| 3KIC_D5M_I_999 | 100% | 17% | 0.018 | 0.997 | 1.5 | 2.02 | 4 | 9 | 1 | 0 | 100% | 0.7 |
| 2IOC_D5M_B_303 | 99% | 7% | 0.037 | 0.987 | 2.92 | 1.85 | 7 | 8 | 2 | 0 | 100% | 1 |
| 6B42_D5M_A_201 | 99% | 25% | 0.04 | 0.987 | 1.33 | 1.62 | 4 | 7 | 0 | 0 | 100% | 1 |
| 2PAU_D5M_B_301 | 99% | 20% | 0.043 | 0.982 | 1.11 | 2.11 | 2 | 11 | 0 | 0 | 100% | 0.9 |
| 24BS_D5M_A_401 | 99% | 70% | 0.043 | 0.982 | 0.57 | 0.44 | - | - | 0 | 0 | 100% | 1 |