SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-1H NOESY | 5.0 mM DNA/RNA (5'-R(*(5MC))-D(P*G)-R(P*(5MC))-D(P*A)-R(P*(5MC))-D(P*G)-R(P*(5MC))-D(P*G)-3') | 90% H2O/10% D2O | 100 mM | 7.0 | 1 atm | 298 | Bruker AVANCE III 400 |
| 2 | 2D 1H-1H TOCSY | 5.0 mM DNA/RNA (5'-R(*(5MC))-D(P*G)-R(P*(5MC))-D(P*A)-R(P*(5MC))-D(P*G)-R(P*(5MC))-D(P*G)-3') | 90% H2O/10% D2O | 100 mM | 7.0 | 1 atm | 298 | Bruker AVANCE III 400 |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE III | 400 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| molecular dynamics | Discovery Studio | |
| molecular dynamics | AmberTools | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 50 |
| Conformers Submitted Total Number | 10 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | chemical shift assignment | MestreLab (Mnova / MestReNova / MestReC) | Cobas | |
| 2 | structure calculation | Discovery Studio | Hossain | |
| 3 | structure calculation | AmberTools | Kollman | |
