9KZP | pdb_00009kzp

Z-form DNA-RNA hybrid in dynamic simulation

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-1H NOESY	5.0 mM DNA/RNA (5'-R(*(5MC))-D(P*G)-R(P*(5MC))-D(P*A)-R(P*(5MC))-D(P*G)-R(P*(5MC))-D(P*G)-3')	90% H2O/10% D2O	100 mM	7.0	1 atm	298	Bruker AVANCE III 400
2	2D 1H-1H TOCSY	5.0 mM DNA/RNA (5'-R(*(5MC))-D(P*G)-R(P*(5MC))-D(P*A)-R(P*(5MC))-D(P*G)-R(P*(5MC))-D(P*G)-3')	90% H2O/10% D2O	100 mM	7.0	1 atm	298	Bruker AVANCE III 400

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE III	400

NMR Refinement
Method	Details	Software
molecular dynamics		Discovery Studio
molecular dynamics		AmberTools

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	50
Conformers Submitted Total Number	10
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	chemical shift assignment	MestreLab (Mnova / MestReNova / MestReC)		Cobas
2	structure calculation	Discovery Studio		Hossain
3	structure calculation	AmberTools		Kollman