9HLY | pdb_00009hly

Crystal structure of Arabidopsis thaliana Acyl-ACP Thioesterase (At-FatA) complexed with N-(3-chlorophenyl)-2-[4-(2-fluorophenyl)-3-methoxy-5-oxo-2H-pyrrol-1-yl]-2-methyl-propanamide

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	9GRR

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		293	0.1M sodium acetate pH4.6, 1.7M ammonium sulphate

Crystal Properties
Matthews coefficient	Solvent content
2.27	45.7

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 97.67	α = 90
b = 98.04	β = 90
c = 127.23	γ = 90

Symmetry
Space Group	I 2 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 2M		2015-11-30	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I02	0.8984	Diamond	I02

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Rrim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.96	48.83	99.9	0.068	1	14.8	6.6		44063

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.96	2.01	99.7		0.7	1.3	6.5

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1.96	48.83	44061	2149	99.862	0.225	0.2221	0.2328	0.2722	0.2779	52.951

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.539			-4.369		3.83

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	30.734
r_dihedral_angle_4_deg	19.666
r_dihedral_angle_3_deg	16.192
r_lrange_it	9.048
r_lrange_other	9.034
r_dihedral_angle_1_deg	7.244
r_scangle_it	7.088
r_scangle_other	7.075
r_mcangle_it	5.773
r_mcangle_other	5.772
r_scbond_it	4.759
r_scbond_other	4.736
r_mcbond_it	4.136
r_mcbond_other	4.135
r_angle_other_deg	2.331
r_angle_refined_deg	1.527
r_nbd_other	0.224
r_symmetry_nbd_refined	0.222
r_symmetry_nbd_other	0.218
r_nbd_refined	0.194
r_xyhbond_nbd_refined	0.18
r_nbtor_refined	0.163
r_symmetry_xyhbond_nbd_other	0.134
r_symmetry_nbtor_other	0.076
r_chiral_restr	0.073
r_symmetry_xyhbond_nbd_refined	0.057
r_bond_other_d	0.035
r_gen_planes_other	0.009
r_bond_refined_d	0.007
r_gen_planes_refined	0.007

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	4177
Nucleic Acid Atoms
Solvent Atoms	29
Heterogen Atoms	66

Software

Software
Software Name	Purpose
REFMAC	refinement
xia2	data reduction
xia2	data scaling
MOLREP	phasing