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Crystal structure of Arabidopsis thaliana Acyl-ACP Thioesterase (At-FatA) complexed with N-(3-chlorophenyl)-2-[4-(2-fluorophenyl)-3-methoxy-5-oxo-2H-pyrrol-1-yl]-2-methyl-propanamide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 9GRR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1M sodium acetate pH4.6, 1.7M ammonium sulphate
Crystal Properties Matthews coefficient Solvent content 2.27 45.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.67 α = 90 b = 98.04 β = 90 c = 127.23 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2015-11-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.8984 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.96 48.83 99.9 0.068 1 14.8 6.6 44063
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.96 2.01 99.7 0.7 1.3 6.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.96 48.83 44061 2149 99.862 0.225 0.2221 0.2328 0.2722 0.2779 52.951
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.539 -4.369 3.83
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.734 r_dihedral_angle_4_deg 19.666 r_dihedral_angle_3_deg 16.192 r_lrange_it 9.048 r_lrange_other 9.034 r_dihedral_angle_1_deg 7.244 r_scangle_it 7.088 r_scangle_other 7.075 r_mcangle_it 5.773 r_mcangle_other 5.772
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.734 r_dihedral_angle_4_deg 19.666 r_dihedral_angle_3_deg 16.192 r_lrange_it 9.048 r_lrange_other 9.034 r_dihedral_angle_1_deg 7.244 r_scangle_it 7.088 r_scangle_other 7.075 r_mcangle_it 5.773 r_mcangle_other 5.772 r_scbond_it 4.759 r_scbond_other 4.736 r_mcbond_it 4.136 r_mcbond_other 4.135 r_angle_other_deg 2.331 r_angle_refined_deg 1.527 r_nbd_other 0.224 r_symmetry_nbd_refined 0.222 r_symmetry_nbd_other 0.218 r_nbd_refined 0.194 r_xyhbond_nbd_refined 0.18 r_nbtor_refined 0.163 r_symmetry_xyhbond_nbd_other 0.134 r_symmetry_nbtor_other 0.076 r_chiral_restr 0.073 r_symmetry_xyhbond_nbd_refined 0.057 r_bond_other_d 0.035 r_gen_planes_other 0.009 r_bond_refined_d 0.007 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4177 Nucleic Acid Atoms Solvent Atoms 29 Heterogen Atoms 66
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling MOLREP phasing