9GRR | pdb_00009grr

Crystal structure of Arabidopsis thaliana Acyl-ACP Thioesterase (At-FatA) complexed with Cinmethylin

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	2OWN

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		298	1.3M ammonium sulphate, 0.1M sodium acetate pH 4.4

Crystal Properties
Matthews coefficient	Solvent content
2.27	45.88

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 98.43	α = 90
b = 98.43	β = 90
c = 126.17	γ = 90

Symmetry
Space Group	I 4 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M-F		2018-03-05	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I04-1	0.9159	Diamond	I04-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Rrim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.4	77.61	97.4	0.056	1	16.6	8.8		59353

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.4	1.42	97.6		0.5	1.2	7.3

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1.4	77.607	59348	3014	97.367	0.217	0.2161	0.2245	0.2329	0.2409	24.135

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.015			0.015		-0.029

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	33.238
r_dihedral_angle_4_deg	19.121
r_dihedral_angle_3_deg	13.826
r_dihedral_angle_1_deg	7.081
r_lrange_it	5.42
r_lrange_other	5.39
r_scangle_it	4.17
r_scangle_other	4.169
r_mcangle_other	2.98
r_mcangle_it	2.979
r_scbond_it	2.73
r_scbond_other	2.729
r_mcbond_it	2.03
r_mcbond_other	2.022
r_angle_refined_deg	1.713
r_angle_other_deg	1.491
r_symmetry_nbd_refined	0.243
r_nbd_refined	0.2
r_symmetry_nbd_other	0.193
r_nbd_other	0.185
r_nbtor_refined	0.166
r_xyhbond_nbd_refined	0.115
r_symmetry_xyhbond_nbd_refined	0.11
r_symmetry_nbtor_other	0.088
r_chiral_restr	0.082
r_bond_refined_d	0.01
r_gen_planes_refined	0.009
r_bond_other_d	0.002
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2080
Nucleic Acid Atoms
Solvent Atoms	159
Heterogen Atoms	36

Software

Software
Software Name	Purpose
REFMAC	refinement
xia2	data reduction
xia2	data scaling
MOLREP	phasing