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Crystal structure of Arabidopsis thaliana Acyl-ACP Thioesterase (At-FatA) complexed with Cinmethylin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2OWN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 1.3M ammonium sulphate, 0.1M sodium acetate pH 4.4
Crystal Properties Matthews coefficient Solvent content 2.27 45.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 98.43 α = 90 b = 98.43 β = 90 c = 126.17 γ = 90
Symmetry Space Group I 4 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2018-03-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.9159 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 77.61 97.4 0.056 1 16.6 8.8 59353
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.42 97.6 0.5 1.2 7.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.4 77.607 59348 3014 97.367 0.217 0.2161 0.2245 0.2329 0.2409 24.135
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.015 0.015 -0.029
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.238 r_dihedral_angle_4_deg 19.121 r_dihedral_angle_3_deg 13.826 r_dihedral_angle_1_deg 7.081 r_lrange_it 5.42 r_lrange_other 5.39 r_scangle_it 4.17 r_scangle_other 4.169 r_mcangle_other 2.98 r_mcangle_it 2.979
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.238 r_dihedral_angle_4_deg 19.121 r_dihedral_angle_3_deg 13.826 r_dihedral_angle_1_deg 7.081 r_lrange_it 5.42 r_lrange_other 5.39 r_scangle_it 4.17 r_scangle_other 4.169 r_mcangle_other 2.98 r_mcangle_it 2.979 r_scbond_it 2.73 r_scbond_other 2.729 r_mcbond_it 2.03 r_mcbond_other 2.022 r_angle_refined_deg 1.713 r_angle_other_deg 1.491 r_symmetry_nbd_refined 0.243 r_nbd_refined 0.2 r_symmetry_nbd_other 0.193 r_nbd_other 0.185 r_nbtor_refined 0.166 r_xyhbond_nbd_refined 0.115 r_symmetry_xyhbond_nbd_refined 0.11 r_symmetry_nbtor_other 0.088 r_chiral_restr 0.082 r_bond_refined_d 0.01 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2080 Nucleic Acid Atoms Solvent Atoms 159 Heterogen Atoms 36
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling MOLREP phasing