☰ Navigation Tabs
Crystal structure of Candida auris dihydrofolate reductase in complex with inhibitor 1051 (R-form) and NADPH
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 8CRH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 295 28% PEG3,350
0.2M LiSO4
0.1M Tris, pH 8.5
Crystal Properties Matthews coefficient Solvent content 2.6 52.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.018 α = 90 b = 69.757 β = 90 c = 112.14 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M Horizontal pre-focus bimorph mirror & KB bimorph mirrors 2024-08-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS-II BEAMLINE 17-ID-2 0.97932 NSLS-II 17-ID-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 32.97 89.5 0.114 0.123 0.046 0.998 9.6 6.7 36195
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 54.7 2.383 2.578 0.945 0.293 6.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 32.97 33780 1694 87.65 0.16586 0.16271 0.1749 0.22999 0.2409 RANDOM 42.715
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.32 -0.06 0.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.937 r_long_range_B_other 13.974 r_long_range_B_refined 13.937 r_scangle_other 13.02 r_dihedral_angle_2_deg 12.937 r_scbond_other 10.46 r_scbond_it 10.452 r_mcangle_other 10.026 r_mcangle_it 10.016 r_rigid_bond_restr 8.135
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.937 r_long_range_B_other 13.974 r_long_range_B_refined 13.937 r_scangle_other 13.02 r_dihedral_angle_2_deg 12.937 r_scbond_other 10.46 r_scbond_it 10.452 r_mcangle_other 10.026 r_mcangle_it 10.016 r_rigid_bond_restr 8.135 r_mcbond_it 7.807 r_mcbond_other 7.799 r_dihedral_angle_1_deg 7.04 r_angle_refined_deg 2.511 r_angle_other_deg 0.816 r_chiral_restr 0.122 r_bond_refined_d 0.015 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3291 Nucleic Acid Atoms Solvent Atoms 174 Heterogen Atoms 157
Software Software Software Name Purpose REFMAC refinement Aimless data scaling XDS data reduction PHASER phasing