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transcription factor ELF3
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3JTG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.36 293 PEG 400, PEG 4000, PEG 8000, PME 550, PME 3350, sodium acetate
Crystal Properties Matthews coefficient Solvent content 2.57 52.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.01 α = 90 b = 65.25 β = 107.545 c = 66.76 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2017-04-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.97242 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.701 45.57 99.5 0.99 6.89 2.5 9547
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.701 2.77 0.46
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.701 45.564 9536 954 99.697 0.223 0.2138 0.2194 0.3054 0.3074 99.037
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -7.293 -1.508 5.545 2.251
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 21.75 r_lrange_it 20.086 r_lrange_other 20.084 r_dihedral_angle_6_deg 14.23 r_dihedral_angle_2_deg 13.285 r_scangle_it 13.263 r_scangle_other 13.26 r_mcangle_it 12.213 r_mcangle_other 12.202 r_scbond_it 8.267
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 21.75 r_lrange_it 20.086 r_lrange_other 20.084 r_dihedral_angle_6_deg 14.23 r_dihedral_angle_2_deg 13.285 r_scangle_it 13.263 r_scangle_other 13.26 r_mcangle_it 12.213 r_mcangle_other 12.202 r_scbond_it 8.267 r_scbond_other 8.265 r_mcbond_it 7.727 r_mcbond_other 7.726 r_dihedral_angle_1_deg 6.704 r_angle_refined_deg 1.585 r_dihedral_angle_other_2_deg 1.095 r_angle_other_deg 0.451 r_symmetry_nbd_refined 0.321 r_nbd_other 0.27 r_symmetry_nbd_other 0.239 r_nbtor_refined 0.229 r_nbd_refined 0.223 r_xyhbond_nbd_refined 0.219 r_symmetry_xyhbond_nbd_refined 0.215 r_symmetry_xyhbond_nbd_other 0.107 r_symmetry_nbtor_other 0.081 r_chiral_restr 0.058 r_gen_planes_refined 0.007 r_bond_refined_d 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 871 Nucleic Acid Atoms 1145 Solvent Atoms 21 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing