☰ Navigation Tabs
Acoustofluidic Serial Crystallography - Off, no acoustic focusing
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6FTR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 288 140 mg/ml lysozyme in 100 mM acetate buffer, pH 3.5. 1 ml of protein solution mixed with 3 ml crystallization buffer (1.2 M NaCl, 15% (w/V) PEG4000, 100 mM acetate buffer pH 3.5) at 288 K followed by rapid mixing and incubation at 288 K.
Crystal Properties Matthews coefficient Solvent content 2.1 41.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.4 α = 90 b = 79.4 β = 90 c = 38.15 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 295 PIXEL DECTRIS EIGER X 16M 2024-04-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, DESY BEAMLINE P11 1.0332 PETRA III, DESY P11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) R Split (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.96 56.44 100 0.986 0.173 4.82 201.69 9231 23.54
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) R Split (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.96 1.98 0.337 1.47 0.69
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.96 56.144 9208 922 99.967 0.184 0.1786 0.1889 0.2294 0.2382 24.473
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.216 0.216 -0.431
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.336 r_dihedral_angle_3_deg 12.534 r_lrange_other 8.968 r_lrange_it 8.944 r_dihedral_angle_1_deg 7.588 r_scangle_it 6.904 r_scangle_other 6.9 r_scbond_it 4.48 r_scbond_other 4.48 r_mcangle_it 2.966
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.336 r_dihedral_angle_3_deg 12.534 r_lrange_other 8.968 r_lrange_it 8.944 r_dihedral_angle_1_deg 7.588 r_scangle_it 6.904 r_scangle_other 6.9 r_scbond_it 4.48 r_scbond_other 4.48 r_mcangle_it 2.966 r_mcangle_other 2.966 r_mcbond_it 2.116 r_mcbond_other 2.109 r_angle_refined_deg 1.243 r_angle_other_deg 0.457 r_nbd_refined 0.219 r_xyhbond_nbd_refined 0.213 r_symmetry_nbd_other 0.196 r_nbd_other 0.185 r_nbtor_refined 0.178 r_symmetry_nbd_refined 0.101 r_symmetry_xyhbond_nbd_refined 0.087 r_symmetry_nbtor_other 0.08 r_chiral_restr 0.055 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 65 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement CrystFEL data reduction CrystFEL data scaling PHENIX phasing PHENIX refinement PDB-REDO refinement CrystFEL data collection