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Crystal structure of human ADAMTS-5 Cb and Spacer domains
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 293 0.2 M Ammonium Acetate, 30% PEG 4000, 0.1 M Sodium citrate pH 5.6
Crystal Properties Matthews coefficient Solvent content 2.24 45.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.361 α = 90 b = 78.27 β = 105.09 c = 77.37 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2014-09-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.8729 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 36.14 99.3 0.153 0.984 7.2 2.76 17475
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.74 0.374 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SIRAS FREE R-VALUE 2.6 34.69 17461 893 99.137 0.196 0.1925 0.1954 0.2596 0.2608 35.971
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.543 -2.038 0.819 -1.102
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.769 r_dihedral_angle_6_deg 11.948 r_dihedral_angle_2_deg 11.27 r_lrange_it 8.72 r_lrange_other 8.712 r_dihedral_angle_1_deg 6.255 r_scangle_it 5.879 r_scangle_other 5.878 r_mcangle_it 5.406 r_mcangle_other 5.405
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.769 r_dihedral_angle_6_deg 11.948 r_dihedral_angle_2_deg 11.27 r_lrange_it 8.72 r_lrange_other 8.712 r_dihedral_angle_1_deg 6.255 r_scangle_it 5.879 r_scangle_other 5.878 r_mcangle_it 5.406 r_mcangle_other 5.405 r_scbond_it 3.632 r_scbond_other 3.631 r_mcbond_it 3.351 r_mcbond_other 3.349 r_angle_refined_deg 1.467 r_angle_other_deg 0.807 r_nbd_other 0.273 r_symmetry_xyhbond_nbd_refined 0.265 r_symmetry_nbd_other 0.226 r_xyhbond_nbd_refined 0.194 r_symmetry_nbd_refined 0.193 r_nbd_refined 0.184 r_nbtor_refined 0.174 r_ncsr_local_group_1 0.117 r_ncsr_local_group_3 0.114 r_ncsr_local_group_2 0.105 r_symmetry_nbtor_other 0.089 r_chiral_restr 0.071 r_symmetry_xyhbond_nbd_other 0.029 r_gen_planes_other 0.007 r_bond_refined_d 0.006 r_gen_planes_refined 0.006 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3668 Nucleic Acid Atoms Solvent Atoms 213 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling SHARP phasing