9RWM | pdb_00009rwm

Crystal structure of human ADAMTS-5 Cb and Spacer domains

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	MICROBATCH		293	0.2 M Ammonium Acetate, 30% PEG 4000, 0.1 M Sodium citrate pH 5.6

Crystal Properties
Matthews coefficient	Solvent content
2.24	45.07

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 49.361	α = 90
b = 78.27	β = 105.09
c = 77.37	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 2M		2014-09-28	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE ID23-2	0.8729	ESRF	ID23-2

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.6	36.14	99.3	0.153	0.984	7.2	2.76		17475

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.6	2.74			0.374	1.9

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	SIRAS	FREE R-VALUE	2.6	34.69	17461	893	99.137	0.196	0.1925	0.1954	0.2596	0.2608	35.971

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
1.543		-2.038	0.819		-1.102

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	15.769
r_dihedral_angle_6_deg	11.948
r_dihedral_angle_2_deg	11.27
r_lrange_it	8.72
r_lrange_other	8.712
r_dihedral_angle_1_deg	6.255
r_scangle_it	5.879
r_scangle_other	5.878
r_mcangle_it	5.406
r_mcangle_other	5.405
r_scbond_it	3.632
r_scbond_other	3.631
r_mcbond_it	3.351
r_mcbond_other	3.349
r_angle_refined_deg	1.467
r_angle_other_deg	0.807
r_nbd_other	0.273
r_symmetry_xyhbond_nbd_refined	0.265
r_symmetry_nbd_other	0.226
r_xyhbond_nbd_refined	0.194
r_symmetry_nbd_refined	0.193
r_nbd_refined	0.184
r_nbtor_refined	0.174
r_ncsr_local_group_1	0.117
r_ncsr_local_group_3	0.114
r_ncsr_local_group_2	0.105
r_symmetry_nbtor_other	0.089
r_chiral_restr	0.071
r_symmetry_xyhbond_nbd_other	0.029
r_gen_planes_other	0.007
r_bond_refined_d	0.006
r_gen_planes_refined	0.006
r_bond_other_d	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	3668
Nucleic Acid Atoms
Solvent Atoms	213
Heterogen Atoms

Software

Software
Software Name	Purpose
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling
SHARP	phasing