9R18 | pdb_00009r18

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	4PO7

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	8	292.15	22 % PEG6000, 1.1 M NaCl, 8% glycerol, 50 mM HEPES pH 8.0

Crystal Properties
Matthews coefficient	Solvent content
3.64	66.2

Symmetry
Space Group	C 1 2 1

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M	KB mirrors	2025-02-26	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	MAX IV BEAMLINE BioMAX	0.7293	MAX IV	BioMAX

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.802	79.875	96.9	0.208	0.23	0.096	0.988	7	5.55		25397

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.802	2.851	100		2.834	3.119	1.292	0.323	1.3	5.7

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	2.802	79.875	25113	1228	95.851	0.214	0.2119	0.2119	0.2532	0.2531	92.821

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.785		1.818	-3.96		0.907

RMS Deviations
Key	Refinement Restraint Deviation
r_lrange_other	14.703
r_lrange_it	14.697
r_dihedral_angle_2_deg	14.225
r_dihedral_angle_3_deg	10.295
r_scangle_it	9.41
r_scangle_other	9.409
r_mcangle_it	7.89
r_mcangle_other	7.889
r_dihedral_angle_6_deg	6.829
r_dihedral_angle_1_deg	6.039

RMS Deviations
Key	Refinement Restraint Deviation
r_lrange_other	14.703
r_lrange_it	14.697
r_dihedral_angle_2_deg	14.225
r_dihedral_angle_3_deg	10.295
r_scangle_it	9.41
r_scangle_other	9.409
r_mcangle_it	7.89
r_mcangle_other	7.889
r_dihedral_angle_6_deg	6.829
r_dihedral_angle_1_deg	6.039
r_scbond_it	5.821
r_scbond_other	5.82
r_mcbond_it	4.877
r_mcbond_other	4.876
r_dihedral_angle_other_2_deg	2.919
r_angle_refined_deg	1.493
r_angle_other_deg	0.521
r_symmetry_xyhbond_nbd_refined	0.326
r_symmetry_nbd_refined	0.268
r_nbd_refined	0.237
r_symmetry_nbd_other	0.213
r_nbd_other	0.191
r_xyhbond_nbd_refined	0.184
r_nbtor_refined	0.181
r_symmetry_nbtor_other	0.084
r_symmetry_xyhbond_nbd_other	0.078
r_chiral_restr	0.067
r_bond_refined_d	0.007
r_gen_planes_refined	0.006
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	5180
Nucleic Acid Atoms
Solvent Atoms	100
Heterogen Atoms	145

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

.id_divider{ color: #ccc; padding: 0 10px 0 10px; } .extended_id_info{ color: #ccc; font-size: 18px; position: relative; top: -10px; left: 4px; } 9R18 | pdb_00009r18