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Hybrid Rubisco containing Arabidopsis thaliana large subunit and Nicotiana tabacum trichome isoform 2 small subunit
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5IU0
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 8.792 f_angle_d 0.611 f_chiral_restr 0.046 f_plane_restr 0.005 f_bond_d 0.003
Sample Rubisco containing Arabidopsis thaliana large subunit and Nicotiana tabacum trichome isoform 2 small subunit Sample Components Arabidopsis thaliana Rubisco large subunit Nicotiana tabacum Rubisco small subunit
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 528218 Reported Resolution (Å) 2.04 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry D4
Map-Model Fitting and Refinement Id 1 (5IU0) Refinement Space REAL Refinement Protocol RIGID BODY FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 (6k x 4k) Electron Dose (electrons/Å**2) 40
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 600 Maximum Defocus (nm) 2400 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification 130000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC 3 CTF CORRECTION cryoSPARC 3 MODEL FITTING Coot RECONSTRUCTION cryoSPARC 3 MODEL REFINEMENT PHENIX
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 916243