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Crystal structure of maize AKR4C13 in P21 space group
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BGS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 291 15% (w/v) PEG 1500 and 0.1 M SPG buffer pH 4.5 added by 0.01 M of beta-NADP+
Crystal Properties Matthews coefficient Solvent content 2.31 46.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.823 α = 90 b = 115.37 β = 104.247 c = 56.532 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2015-07-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.9334 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 57.65 98.6 0.048 11.37 1.9 120277
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.54 98.6 0.644 1.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.45 39.728 117919 5905 99.953 0.16 0.1592 0.1688 0.183 0.1896 15.675
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.041 -0.062 -0.057 0.042
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.793 r_dihedral_angle_3_deg 11.88 r_dihedral_angle_2_deg 7.592 r_dihedral_angle_1_deg 6.182 r_lrange_it 5.823 r_lrange_other 5.714 r_scangle_it 4.462 r_scangle_other 4.461 r_scbond_it 2.891 r_scbond_other 2.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.793 r_dihedral_angle_3_deg 11.88 r_dihedral_angle_2_deg 7.592 r_dihedral_angle_1_deg 6.182 r_lrange_it 5.823 r_lrange_other 5.714 r_scangle_it 4.462 r_scangle_other 4.461 r_scbond_it 2.891 r_scbond_other 2.89 r_mcangle_other 2.235 r_mcangle_it 2.233 r_dihedral_angle_other_2_deg 2.157 r_angle_refined_deg 1.854 r_mcbond_it 1.547 r_mcbond_other 1.543 r_angle_other_deg 0.64 r_symmetry_nbd_refined 0.245 r_nbd_other 0.236 r_nbd_refined 0.223 r_symmetry_nbd_other 0.198 r_symmetry_xyhbond_nbd_other 0.184 r_nbtor_refined 0.18 r_xyhbond_nbd_refined 0.166 r_symmetry_xyhbond_nbd_refined 0.157 r_chiral_restr 0.09 r_symmetry_nbtor_other 0.08 r_bond_refined_d 0.011 r_gen_planes_refined 0.01 r_gen_planes_other 0.003 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4848 Nucleic Acid Atoms Solvent Atoms 695 Heterogen Atoms 140
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction XSCALE data scaling BALBES phasing