SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D NOESY | 5 mM None DNA (5'-D(*CP*GP*CP*AP*CP*GP*CP*G)-3'), 5 mM None RNA (5'-R(*CP*GP*CP*GP*UP*GP*CP*G)-3') | 100% D2O | 100 mM | 7 | 1 atm | 298 | Bruker AVANCE III 400 |
| 2 | 2D 1H-1H TOCSY | 5 mM None DNA (5'-D(*CP*GP*CP*AP*CP*GP*CP*G)-3'), 5 mM None RNA (5'-R(*CP*GP*CP*GP*UP*GP*CP*G)-3') | 100% D2O | 100 mM | 7 | 1 atm | 298 | Bruker AVANCE III 400 |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE III | 400 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| molecular dynamics | Discovery Studio | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 50 |
| Conformers Submitted Total Number | 10 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | chemical shift assignment | MestreLab (Mnova / MestReNova / MestReC) | Carlos Cobas | |
| 2 | structure calculation | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
| 3 | refinement | Discovery Studio | Sabia Nawsheen, Md. Abu Sufian, Kanij Nahar Deepa | |
