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Crystal structure of Arabidopsis thaliana Acyl-ACP Thioesterase (At-FatA) complexed with methiozolin-fluorine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 9GRR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1M sodium acetate pH4.6, 1.5M ammonium sulphate
Crystal Properties Matthews coefficient Solvent content 2.2 44.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.33 α = 90 b = 97.33 β = 90 c = 124.94 γ = 90
Symmetry Space Group I 4 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2016-02-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9763 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.38 76.78 99.3 0.06 1 17 8.2 61206
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.38 1.42 94 1.13 0.5 1.6 5.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.38 76.78 61205 3083 99.285 0.191 0.1904 0.1935 0.2155 22.402
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.236 -0.236 0.471
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.687 r_dihedral_angle_4_deg 15.679 r_dihedral_angle_3_deg 12.93 r_dihedral_angle_1_deg 6.722 r_lrange_it 5.167 r_lrange_other 5.155 r_scangle_other 4.243 r_scangle_it 4.239 r_scbond_other 2.732 r_scbond_it 2.729
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.687 r_dihedral_angle_4_deg 15.679 r_dihedral_angle_3_deg 12.93 r_dihedral_angle_1_deg 6.722 r_lrange_it 5.167 r_lrange_other 5.155 r_scangle_other 4.243 r_scangle_it 4.239 r_scbond_other 2.732 r_scbond_it 2.729 r_mcangle_it 2.606 r_mcangle_other 2.605 r_mcbond_other 1.736 r_mcbond_it 1.735 r_angle_refined_deg 1.592 r_angle_other_deg 1.509 r_symmetry_nbd_refined 0.266 r_nbd_other 0.229 r_nbd_refined 0.199 r_symmetry_nbd_other 0.193 r_nbtor_refined 0.169 r_xyhbond_nbd_refined 0.126 r_symmetry_xyhbond_nbd_refined 0.093 r_symmetry_nbtor_other 0.087 r_chiral_restr 0.079 r_bond_refined_d 0.01 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2094 Nucleic Acid Atoms Solvent Atoms 169 Heterogen Atoms 35
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling MOLREP phasing