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Prostate Specific Membrane Antigen (PSMA) in complex with nanobody7
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1Z8L
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 9.272 f_angle_d 0.632 f_chiral_restr 0.042 f_plane_restr 0.004 f_bond_d 0.003
Sample PSMA in complex with nanobody 7
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details Homemade plunger, manually blotted for 3 seconds.
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 478371 Reported Resolution (Å) 2.66 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 (1Z8L) Refinement Space REAL Refinement Protocol FLEXIBLE FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type TFS FALCON 4i (4k x 4k) Electron Dose (electrons/Å**2) 30
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS GLACIOS Minimum Defocus (nm) 500 Maximum Defocus (nm) 2000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 200 Imaging Details
EM Software Task Software Package Version MODEL REFINEMENT PHENIX 1.20.1_4487
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details NONE