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FANCM-FAAP24-dsDNA complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4BXO protein only
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 25% PEG3350
0.1M di-ammonium monohydrogen phosphate
Crystal Properties Matthews coefficient Solvent content 2.51 51.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.008 α = 91.629 b = 69.975 β = 89.929 c = 86.76 γ = 115.952
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-10-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 1.06 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 86.72 96.2 0.054 0.998 17 3.9 48487
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.44 70.19 0.928 0.344 1.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.401 86.718 48458 1979 96.147 0.217 0.2145 0.2146 0.2645 0.2648 Random 69.793
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.968 -1.416 -0.144 -2.152 -0.639 3.634
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.529 r_dihedral_angle_6_deg 13.922 r_dihedral_angle_2_deg 12.77 r_lrange_it 9.829 r_lrange_other 9.829 r_scangle_it 7.811 r_scangle_other 7.811 r_dihedral_angle_1_deg 6.774 r_mcangle_it 5.35 r_mcangle_other 5.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.529 r_dihedral_angle_6_deg 13.922 r_dihedral_angle_2_deg 12.77 r_lrange_it 9.829 r_lrange_other 9.829 r_scangle_it 7.811 r_scangle_other 7.811 r_dihedral_angle_1_deg 6.774 r_mcangle_it 5.35 r_mcangle_other 5.35 r_scbond_it 5.068 r_scbond_other 5.067 r_mcbond_it 3.345 r_mcbond_other 3.345 r_angle_refined_deg 1.726 r_dihedral_angle_other_2_deg 1.574 r_angle_other_deg 0.651 r_nbd_refined 0.185 r_nbtor_refined 0.168 r_symmetry_nbd_other 0.144 r_ncsr_local_group_3 0.128 r_symmetry_nbd_refined 0.126 r_symmetry_xyhbond_nbd_refined 0.126 r_xyhbond_nbd_refined 0.124 r_nbd_other 0.092 r_ncsr_local_group_1 0.091 r_ncsr_local_group_2 0.08 r_chiral_restr 0.078 r_symmetry_nbtor_other 0.07 r_bond_refined_d 0.007 r_gen_planes_refined 0.007 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6415 Nucleic Acid Atoms 859 Solvent Atoms 114 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement DIALS data reduction DIALS data scaling PHASER phasing