☰ Navigation Tabs
Quadruplex-duplex hybrid (QDH) complex with 360A from PIM1 oncogene.
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-13C HSQC aromatic 500 uM NA SO7-360A 90% H2O/10% D2O 20 mM 7.1 1 atm 298.2 Bruker AVANCE NEO 950 2 2D 1H-13C HSQC 500 uM NA SO7-360A 90% H2O/10% D2O 20 mM 7.1 1 atm 298.2 Bruker AVANCE NEO 950 3 2D 1H-15N HSQC 500 uM NA SO7-360A 90% H2O/10% D2O 20 mM 7.1 1 atm 298.2 Bruker AVANCE NEO 850 4 2D NOESY 500 uM NA SO7-360A 90% H2O/10% D2O 20 mM 7.1 1 atm 298.2 Bruker AVANCE NEO 850 5 2D 1H-1H TOCSY 500 uM NA SO7-360A 90% H2O/10% D2O 20 mM 7.1 1 atm 298.2 Bruker AVANCE NEO 600 6 2D DQF-COSY 500 uM NA SO7-360A 90% H2O/10% D2O 20 mM 7.1 1 atm 298.2 Bruker AVANCE NEO 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE NEO 950 2 Bruker AVANCE NEO 850 3 Bruker AVANCE NEO 600
NMR Refinement Method Details Software simulated annealing Amber
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 chemical shift assignment NMRFAM-SPARKY 1.414 Lee W, Tonelli M, Markley JL 2 structure calculation Amber 22 Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman 3 refinement Amber 22 Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman 4 peak picking NMRFAM-SPARKY 1.414 Lee W, Tonelli M, Markley JL