9GVI | pdb_00009gvi

Quadruplex-duplex hybrids (QDH) complex with PhenDC3 from PIM1 oncogene.

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-13C HSQC aromatic	500 uM NA SO7-PhenDC3, 200 uM [U-13C; U-15N]-Guanine SO7-PhenDC3	90% H2O/10% D2O	20 mM	7.1	1 atm	298.2	Bruker AVANCE NEO 950
2	2D 1H-13C HSQC	500 uM NA SO7-PhenDC3, 200 uM [U-13C; U-15N]-Guanine SO7-PhenDC3	90% H2O/10% D2O	20 mM	7.1	1 atm	298.2	Bruker AVANCE NEO 950
3	2D 1H-15N HSQC	500 uM NA SO7-PhenDC3, 200 uM [U-13C; U-15N]-Guanine SO7-PhenDC3	90% H2O/10% D2O	20 mM	7.1	1 atm	298.2	Bruker AVANCE NEO 850
4	2D NOESY	500 uM NA SO7-PhenDC3, 200 uM [U-13C; U-15N]-Guanine SO7-PhenDC3	90% H2O/10% D2O	20 mM	7.1	1 atm	298.2	Bruker AVANCE NEO 850
5	2D 1H-1H TOCSY	500 uM NA SO7-PhenDC3, 200 uM [U-13C; U-15N]-Guanine SO7-PhenDC3	90% H2O/10% D2O	20 mM	7.1	1 atm	298.2	Bruker AVANCE NEO 600
6	2D DQF-COSY	500 uM NA SO7-PhenDC3, 200 uM [U-13C; U-15N]-Guanine SO7-PhenDC3	90% H2O/10% D2O	20 mM	7.1	1 atm	298.2	Bruker AVANCE NEO 600

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE NEO	950
2	Bruker	AVANCE NEO	850
3	Bruker	AVANCE NEO	600

NMR Refinement
Method	Details	Software
simulated annealing		Amber

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	200
Conformers Submitted Total Number	10
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	chemical shift assignment	NMRFAM-SPARKY	1.414	Woonghee Lee, Marco Tonelli, and John L. Markley
2	structure calculation	Amber	22	Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
3	refinement	Amber	22	Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
4	peak picking	NMRFAM-SPARKY	1.414	Woonghee Lee, Marco Tonelli, and John L. Markley