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Structure of CliM-stalled Bacillus subtilis 70S ribosome with release factor bound in the A-site
Refinement RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.453 r_long_range_B_refined 14.161 r_long_range_B_other 14.161 r_scangle_other 10.309 r_mcangle_it 10.025 r_mcangle_other 10.025 r_dihedral_angle_2_deg 8.078 r_dihedral_angle_1_deg 7.763 r_scbond_it 6.544 r_scbond_other 6.544
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.453 r_long_range_B_refined 14.161 r_long_range_B_other 14.161 r_scangle_other 10.309 r_mcangle_it 10.025 r_mcangle_other 10.025 r_dihedral_angle_2_deg 8.078 r_dihedral_angle_1_deg 7.763 r_scbond_it 6.544 r_scbond_other 6.544 r_mcbond_it 6.389 r_mcbond_other 6.388 r_angle_refined_deg 1.616 r_angle_other_deg 0.595 r_chiral_restr 0.066 r_gen_planes_refined 0.011 r_bond_refined_d 0.006 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample Structure of CliM-stalled Bacillus subtilis 70S ribosome with release factor bound in the A-site Sample Components Bacillus subtilis 70S ribosome Nascent Chain CliM mRNA
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE-PROPANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 348223 Reported Resolution (Å) 2.3 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 1.14
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 300 Maximum Defocus (nm) 900 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version MODEL REFINEMENT REFMAC 5.8.0415
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION