9FY1 | pdb_00009fy1

Structure of CliM-stalled Bacillus subtilis 70S ribosome with release factor bound in the A-site


Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 0]Large ribosomal subunit protein bL32
B [auth 1]50S ribosomal protein L33 1
C [auth 2]50S ribosomal protein L34
D [auth 3]50S ribosomal protein L35
E [auth 4]50S ribosomal protein L36
F [auth 5]Nascent Chain CliM- -
H [auth 7]mRNA---
I [auth B]5S rRNA---
J [auth C]Large ribosomal subunit protein uL2
K [auth D]50S ribosomal protein L3
L [auth E]50S ribosomal protein L4
M [auth F]50S ribosomal protein L5
N [auth G]Large ribosomal subunit protein uL6
O [auth J]50S ribosomal protein L13
P [auth K]50S ribosomal protein L14
Q [auth L]50S ribosomal protein L15
R [auth M]50S ribosomal protein L16
S [auth N]50S ribosomal protein L17
T [auth O]50S ribosomal protein L18
U [auth P]50S ribosomal protein L19
V [auth Q]Large ribosomal subunit protein bL20
W [auth R]50S ribosomal protein L21
Y [auth T]Large ribosomal subunit protein uL23
Z [auth U]50S ribosomal protein L24
AA [auth X]Large ribosomal subunit protein bL28
BA [auth Y]50S ribosomal protein L29
CA [auth Z]Large ribosomal subunit protein uL30
DA [auth c]Small ribosomal subunit protein uS3
EA [auth e]30S ribosomal protein S5
FA [auth f]30S ribosomal protein S6
GA [auth g]Small ribosomal subunit protein uS7
HA [auth h]30S ribosomal protein S8
IA [auth i]Small ribosomal subunit protein uS9
JA [auth j]30S ribosomal protein S10
KA [auth k]30S ribosomal protein S11
LA [auth l]Small ribosomal subunit protein uS12
OA [auth o]30S ribosomal protein S15
PA [auth p]30S ribosomal protein S16
QA [auth q]30S ribosomal protein S17
RA [auth r]30S ribosomal protein S18
SA [auth t]30S ribosomal protein S20
TA [auth v]P-site tRNA-Phe---
UA [auth A]23S rRNA---
VA [auth a]16S rRNA---
WA [auth b]30S ribosomal protein S2
YA [auth 8]Peptide chain release factor 2
ZA [auth W]Large ribosomal subunit protein bL27
AB [auth d]30S ribosomal protein S4
G [auth 6]50S ribosomal protein L31
XA [auth s]30S ribosomal protein S19
NA [auth n]30S ribosomal protein S14
MA [auth m]Small ribosomal subunit protein uS13
X [auth S]50S ribosomal protein L22

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth 0]IPR002677Large ribosomal subunit protein bL32Family
A [auth 0]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
A [auth 0]IPR044957Large ribosomal subunit protein bL32, bacteriaFamily
B [auth 1]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
B [auth 1]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
B [auth 1]IPR001705Large ribosomal subunit protein bL33Family
B [auth 1]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
C [auth 2]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
C [auth 2]IPR000271Large ribosomal subunit protein bL34Family
D [auth 3]IPR021137Large ribosomal subunit protein bL35-likeFamily
D [auth 3]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
D [auth 3]IPR001706Large ribosomal subunit protein bL35Family
D [auth 3]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
E [auth 4]IPR000473Large ribosomal subunit protein bL36Family
E [auth 4]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
J [auth C]IPR005880Large ribosomal subunit protein uL2, bacteria/organellaFamily
J [auth C]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
J [auth C]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
J [auth C]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
J [auth C]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
J [auth C]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
J [auth C]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
J [auth C]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
J [auth C]IPR002171Large ribosomal subunit protein uL2Family
K [auth D]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
K [auth D]IPR019927Large ribosomal subunit protein uL3, bacteria/organellaFamily
K [auth D]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
K [auth D]IPR000597Large ribosomal subunit protein uL3Family
L [auth E]IPR013005Large ribosomal subunit protein uL4-likeFamily
L [auth E]IPR002136Large ribosomal subunit protein uL4Family
L [auth E]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
M [auth F]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
M [auth F]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
M [auth F]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
M [auth F]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
M [auth F]IPR002132Large ribosomal subunit protein uL5Family
M [auth F]IPR020930Large ribosomal subunit protein uL5, bacteriaFamily
N [auth G]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
N [auth G]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
N [auth G]IPR000702Large ribosomal subunit protein uL6-likeFamily
N [auth G]IPR019906Large ribosomal subunit protein uL6, bacteriaFamily
N [auth G]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
O [auth J]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
O [auth J]IPR005822Large ribosomal subunit protein uL13Family
O [auth J]IPR005823Large ribosomal subunit protein uL13, bacteriaFamily
O [auth J]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
P [auth K]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
P [auth K]IPR000218Large ribosomal subunit protein uL14Family
P [auth K]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
P [auth K]IPR005745Large ribosomal subunit protein uL14, bacteriaFamily
Q [auth L]IPR021131Large ribosomal subunit protein uL15/eL18Domain
Q [auth L]IPR030878Large ribosomal subunit protein uL15Family
Q [auth L]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
Q [auth L]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
Q [auth L]IPR005749Large ribosomal subunit protein uL15, bacteriaFamily
R [auth M]IPR000114Large ribosomal subunit protein uL16, bacteriaFamily
R [auth M]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
R [auth M]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
R [auth M]IPR016180Large ribosomal subunit protein uL16 domainDomain
R [auth M]IPR047873Large ribosomal subunit protein uL16Family
S [auth N]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
S [auth N]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
S [auth N]IPR000456Large ribosomal subunit protein bL17Family
T [auth O]IPR005484Large ribosomal subunit protein uL18, bacterial/plantae/animaliaFamily
T [auth O]IPR004389Large ribosomal subunit protein uL18, bacteriaFamily
U [auth P]IPR001857Large ribosomal subunit protein bL19Family
U [auth P]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
U [auth P]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
U [auth P]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
V [auth Q]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
V [auth Q]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
V [auth Q]IPR005813Large ribosomal subunit protein bL20Family
W [auth R]IPR028909Large ribosomal subunit protein bL21-likeFamily
W [auth R]IPR001787Large ribosomal subunit protein bL21Family
W [auth R]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
W [auth R]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
Y [auth T]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
Y [auth T]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
Y [auth T]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
Y [auth T]IPR013025Large ribosomal subunit protein uL23-likeFamily
Z [auth U]IPR003256Large ribosomal subunit protein uL24Family
Z [auth U]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
Z [auth U]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
Z [auth U]IPR005824KOWDomain
Z [auth U]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
Z [auth U]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
AA [auth X]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
AA [auth X]IPR050096Bacterial ribosomal protein bL28Family
AA [auth X]IPR001383Large ribosomal subunit protein bL28, bacteriaFamily
AA [auth X]IPR026569Large ribosomal subunit protein bL28Family
AA [auth X]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
BA [auth Y]IPR050063Universal ribosomal protein uL29Family
BA [auth Y]IPR001854Large ribosomal subunit protein uL29Family
BA [auth Y]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
BA [auth Y]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
CA [auth Z]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
CA [auth Z]IPR005996Large ribosomal subunit protein uL30, bacteriaFamily
CA [auth Z]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
CA [auth Z]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
DA [auth c]IPR005704Small ribosomal subunit protein uS3, bacteriaFamily
DA [auth c]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
DA [auth c]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
DA [auth c]IPR004087K Homology domainDomain
DA [auth c]IPR004044K Homology domain, type 2Domain
DA [auth c]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
DA [auth c]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
DA [auth c]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
EA [auth e]IPR005712Small ribosomal subunit protein uS5, bacteriaFamily
EA [auth e]IPR000851Small ribosomal subunit protein uS5Family
EA [auth e]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
EA [auth e]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
EA [auth e]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
EA [auth e]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
EA [auth e]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
FA [auth f]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
FA [auth f]IPR000529Small ribosomal subunit protein bS6Family
FA [auth f]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
FA [auth f]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
FA [auth f]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
GA [auth g]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
GA [auth g]IPR005717Small ribosomal subunit protein uS7, bacteria/organellaFamily
GA [auth g]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
GA [auth g]IPR000235Small ribosomal subunit protein uS7Family
GA [auth g]IPR023798Small ribosomal subunit protein uS7 domainDomain
HA [auth h]IPR000630Small ribosomal subunit protein uS8Family
HA [auth h]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
HA [auth h]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
IA [auth i]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
IA [auth i]IPR023035Small ribosomal subunit protein uS9, bacteria/plastidFamily
IA [auth i]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
IA [auth i]IPR000754Small ribosomal subunit protein uS9Family
IA [auth i]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
JA [auth j]IPR001848Small ribosomal subunit protein uS10Family
JA [auth j]IPR027486Small ribosomal subunit protein uS10 domainDomain
JA [auth j]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
JA [auth j]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
KA [auth k]IPR001971Small ribosomal subunit protein uS11Family
KA [auth k]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
KA [auth k]IPR019981Small ribosomal subunit protein uS11, bacteriaFamily
KA [auth k]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
LA [auth l]IPR006032Small ribosomal subunit protein uS12Family
LA [auth l]IPR005679Ribosomal protein uS12, bacteriaFamily
LA [auth l]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
OA [auth o]IPR005290Small ribosomal subunit protein uS15, bacteriaFamily
OA [auth o]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
OA [auth o]IPR000589Small ribosomal subunit protein uS15Family
PA [auth p]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
PA [auth p]IPR000307Small ribosomal subunit protein bS16Family
PA [auth p]IPR020592Small ribosomal subunit protein bS16, conserved siteConserved Site
QA [auth q]IPR019984Small ribosomal subunit protein uS17, bacteria/chloroplastFamily
QA [auth q]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
QA [auth q]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
QA [auth q]IPR000266Small ribosomal subunit protein uS17Family
RA [auth r]IPR001648Small ribosomal subunit protein bS18Family
RA [auth r]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
RA [auth r]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
SA [auth t]IPR036510Small ribosomal subunit protein bS20 superfamilyHomologous Superfamily
SA [auth t]IPR002583Small ribosomal subunit protein bS20Family
WA [auth b]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
WA [auth b]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
WA [auth b]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
WA [auth b]IPR001865Small ribosomal subunit protein uS2Family
YA [auth 8]IPR004374Peptide chain release factor 2Family
YA [auth 8]IPR000352Peptide chain release factor class IDomain
YA [auth 8]IPR045853Peptide chain release factor class I superfamilyHomologous Superfamily
YA [auth 8]IPR005139Peptide chain release factorDomain
ZA [auth W]IPR001684Large ribosomal subunit protein bL27Family
ZA [auth W]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
AB [auth d]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
AB [auth d]IPR002942RNA-binding S4 domainDomain
AB [auth d]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
AB [auth d]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
AB [auth d]IPR022801Small ribosomal subunit protein uS4Family
AB [auth d]IPR005709Small ribosomal subunit protein uS4, bacteriaFamily
G [auth 6]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
G [auth 6]IPR027491Large ribosomal subunit protein bL31 type AFamily
G [auth 6]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
G [auth 6]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
XA [auth s]IPR005732Small ribosomal subunit protein uS19, bacteriaFamily
XA [auth s]IPR002222Small ribosomal subunit protein uS19Family
XA [auth s]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
XA [auth s]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
NA [auth n]IPR023053Small ribosomal subunit protein uS14, bacteriaFamily
NA [auth n]IPR001209Small ribosomal subunit protein uS14Family
NA [auth n]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
NA [auth n]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
MA [auth m]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
MA [auth m]IPR001892Small ribosomal subunit protein uS13Family
MA [auth m]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
MA [auth m]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
MA [auth m]IPR019980Small ribosomal subunit protein uS13, bacteriaFamily
X [auth S]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
X [auth S]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
X [auth S]IPR001063Large ribosomal subunit protein uL22Family
X [auth S]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
X [auth S]IPR047867Large ribosomal subunit protein uL22, bacteria/organellaFamily