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mScarlet (SG C5) - Directionality of Optical Properties of Fluorescent Proteins
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6FWW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 291 35 % v/v Polyethylene glycol 400
70 mM Sodium acetate
140 mM Lithium sulfate
Crystal Properties Matthews coefficient Solvent content 2.05 39.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.892 α = 90 b = 45.098 β = 101.78 c = 58.294 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2019-11-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.91814 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 50 99.5 0.065 0.076 0.9990000000000001 10.92 3.7 34204
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.54 1.26 1.4709999999999999 0.531
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.5 41.1 32419 1706 99.39 0.19142 0.18967 0.22352 0.227 RANDOM 30.085
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.78 -1.32 0.73 1.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.178 r_dihedral_angle_4_deg 19.631 r_dihedral_angle_3_deg 13.327 r_dihedral_angle_1_deg 7.506 r_long_range_B_refined 5.926 r_long_range_B_other 5.915 r_scangle_other 5.278 r_scbond_it 3.691 r_scbond_other 3.665 r_mcangle_other 2.829
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.178 r_dihedral_angle_4_deg 19.631 r_dihedral_angle_3_deg 13.327 r_dihedral_angle_1_deg 7.506 r_long_range_B_refined 5.926 r_long_range_B_other 5.915 r_scangle_other 5.278 r_scbond_it 3.691 r_scbond_other 3.665 r_mcangle_other 2.829 r_mcangle_it 2.826 r_mcbond_it 2.179 r_mcbond_other 2.169 r_angle_refined_deg 1.868 r_angle_other_deg 1.463 r_chiral_restr 0.086 r_bond_refined_d 0.013 r_gen_planes_refined 0.012 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1784 Nucleic Acid Atoms Solvent Atoms 84 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement XSCALE data scaling XDS data reduction MOLREP phasing