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Aurora-C with SER mutation in complex with INCENP peptide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BFY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 0.1 M Bis-Tris pH5.5, 0.025-0.05 M ammonium sulphate, 9-12% PEG3350
Crystal Properties Matthews coefficient Solvent content 2.5 50.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.28 α = 90 b = 79.49 β = 90 c = 265.24 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ 2006-04-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5405
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 19.87 99.6 0.126 6.1 4.8 21012
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.9 99.9 0.35 2.3 5.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.8 19.87 20966 1075 99.252 0.231 0.2313 0.2279 0.2295 0.294 0.292 Random selection 69.968
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.348 -4.312 4.659
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.31 r_dihedral_angle_4_deg 18.167 r_dihedral_angle_3_deg 18.002 r_lrange_it 7.902 r_lrange_other 7.897 r_dihedral_angle_1_deg 6.453 r_scangle_it 5.297 r_scangle_other 5.297 r_mcangle_other 5.055 r_mcangle_it 5.054
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.31 r_dihedral_angle_4_deg 18.167 r_dihedral_angle_3_deg 18.002 r_lrange_it 7.902 r_lrange_other 7.897 r_dihedral_angle_1_deg 6.453 r_scangle_it 5.297 r_scangle_other 5.297 r_mcangle_other 5.055 r_mcangle_it 5.054 r_scbond_it 3.202 r_scbond_other 3.201 r_mcbond_it 3.087 r_mcbond_other 3.081 r_angle_refined_deg 1.279 r_angle_other_deg 1.052 r_symmetry_nbd_refined 0.276 r_nbd_other 0.21 r_nbd_refined 0.19 r_symmetry_nbd_other 0.172 r_nbtor_refined 0.156 r_xyhbond_nbd_refined 0.134 r_ncsr_local_group_1 0.099 r_ncsr_local_group_2 0.097 r_symmetry_nbtor_other 0.074 r_symmetry_xyhbond_nbd_refined 0.055 r_chiral_restr 0.048 r_bond_refined_d 0.004 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5214 Nucleic Acid Atoms Solvent Atoms 56 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement CrystalClear data reduction CrystalClear data scaling PHASER phasing