9ESA | pdb_00009esa

Aurora-C with SER mutation in complex with INCENP peptide

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	2BFY

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	5.5	293	0.1 M Bis-Tris pH5.5, 0.025-0.05 M ammonium sulphate, 9-12% PEG3350

Crystal Properties
Matthews coefficient	Solvent content
2.5	50.73

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 79.28	α = 90
b = 79.49	β = 90
c = 265.24	γ = 90

Symmetry
Space Group	C 2 2 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	IMAGE PLATE	RIGAKU RAXIS IV++		2006-04-20	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	ROTATING ANODE	RIGAKU MICROMAX-007 HF	1.5405

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.8	19.87	99.6	0.126	6.1	4.8		21012

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.8	2.9	99.9		0.35	2.3	5.1

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	2.8	19.87	20966	1075	99.252	0.231	0.2313	0.2279	0.2295	0.294	0.292	Random selection	69.968

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.348			-4.312		4.659

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	33.31
r_dihedral_angle_4_deg	18.167
r_dihedral_angle_3_deg	18.002
r_lrange_it	7.902
r_lrange_other	7.897
r_dihedral_angle_1_deg	6.453
r_scangle_it	5.297
r_scangle_other	5.297
r_mcangle_other	5.055
r_mcangle_it	5.054
r_scbond_it	3.202
r_scbond_other	3.201
r_mcbond_it	3.087
r_mcbond_other	3.081
r_angle_refined_deg	1.279
r_angle_other_deg	1.052
r_symmetry_nbd_refined	0.276
r_nbd_other	0.21
r_nbd_refined	0.19
r_symmetry_nbd_other	0.172
r_nbtor_refined	0.156
r_xyhbond_nbd_refined	0.134
r_ncsr_local_group_1	0.099
r_ncsr_local_group_2	0.097
r_symmetry_nbtor_other	0.074
r_symmetry_xyhbond_nbd_refined	0.055
r_chiral_restr	0.048
r_bond_refined_d	0.004
r_gen_planes_refined	0.004
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	5214
Nucleic Acid Atoms
Solvent Atoms	56
Heterogen Atoms	4

Software

Software
Software Name	Purpose
REFMAC	refinement
CrystalClear	data reduction
CrystalClear	data scaling
PHASER	phasing