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Crystal Structure of AroC
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 100 mM Sodium Acetate
pH 4.5
8% PEG3350
Crystal Properties Matthews coefficient Solvent content 1.98 38.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.189 α = 90 b = 46.817 β = 101.969 c = 76.468 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2024-01-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.95299 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 46.82 99.9 0.996 16.2 6.4 18709
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.25 2.32 99.9 0.987
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.25 40.504 18673 902 99.69 0.189 0.1861 0.1836 0.2401 0.2363 20.616
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.121 -0.886 0.132 0.113
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 17.086 r_dihedral_angle_6_deg 15.138 r_lrange_it 8.617 r_dihedral_angle_1_deg 7.253 r_dihedral_angle_2_deg 6.257 r_scangle_it 4.497 r_mcangle_it 4.051 r_scbond_it 2.867 r_mcbond_it 2.368 r_angle_refined_deg 1.456
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 17.086 r_dihedral_angle_6_deg 15.138 r_lrange_it 8.617 r_dihedral_angle_1_deg 7.253 r_dihedral_angle_2_deg 6.257 r_scangle_it 4.497 r_mcangle_it 4.051 r_scbond_it 2.867 r_mcbond_it 2.368 r_angle_refined_deg 1.456 r_nbtor_refined 0.317 r_nbd_refined 0.219 r_symmetry_nbd_refined 0.213 r_xyhbond_nbd_refined 0.144 r_symmetry_xyhbond_nbd_refined 0.111 r_chiral_restr 0.104 r_gen_planes_refined 0.007 r_bond_refined_d 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3286 Nucleic Acid Atoms Solvent Atoms 119 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling MOLREP phasing