☰ Navigation Tabs
Structure of ClpC1 N-terminal Domain complexed with semi-synthetic Rufomycin analog
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6CN8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 295 0.2 M Sodium acetate, 0.1 M TRIS pH 8.5, 16% PEG 4000
Crystal Properties Matthews coefficient Solvent content 1.61 23.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 33.96 α = 90 b = 58.16 β = 90 c = 60.74 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2020-07-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 1.12713 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.64 42.01 94.2 0.071 0.071 0.109 0.044 0.997 25.9 5.8 15221 1 21.34
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.68 67.8 0.539 0.205 0.924 2.2 5.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.64 30.37 0.05 15190 1415 99.46 0.1814 0.18 0.1812 0.2109 0.2129 29.17
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 21.0038 f_angle_d 1.5239 f_chiral_restr 0.084 f_plane_restr 0.0102 f_bond_d 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1110 Nucleic Acid Atoms Solvent Atoms 57 Heterogen Atoms 91
Software Software Software Name Purpose PHENIX refinement HKL-2000 data reduction SCALEPACK data scaling AMoRE phasing