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Crystal structure of Cry1Fa R226Q
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1CIY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 10% PEG6000, 5% MPD, 0.1 M HEPES, pH 7.5, 4% Benzamidine HCl
Crystal Properties Matthews coefficient Solvent content 1 40.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.23 α = 90 b = 68.35 β = 90 c = 121.81 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X 9M 2018-11-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 0.987 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.02 68.22 100 0.126 0.993 15.3 11.8 36045
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.02 2.13 0.192 0.983
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.024 60.905 35698 1789 99.997 0.156 0.154 0.1656 0.1971 0.2076 RANDOM 15.441
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.242 -0.582 -0.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.748 r_dihedral_angle_3_deg 13.999 r_dihedral_angle_2_deg 12.56 r_dihedral_angle_1_deg 7.191 r_lrange_it 5.141 r_lrange_other 5.129 r_scangle_it 3.891 r_scangle_other 3.89 r_scbond_it 2.51 r_scbond_other 2.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.748 r_dihedral_angle_3_deg 13.999 r_dihedral_angle_2_deg 12.56 r_dihedral_angle_1_deg 7.191 r_lrange_it 5.141 r_lrange_other 5.129 r_scangle_it 3.891 r_scangle_other 3.89 r_scbond_it 2.51 r_scbond_other 2.51 r_mcangle_other 2.321 r_mcangle_it 2.32 r_angle_refined_deg 1.553 r_mcbond_it 1.496 r_mcbond_other 1.495 r_angle_other_deg 0.537 r_nbd_other 0.249 r_nbd_refined 0.216 r_symmetry_nbd_refined 0.191 r_symmetry_nbd_other 0.189 r_nbtor_refined 0.184 r_symmetry_xyhbond_nbd_refined 0.177 r_xyhbond_nbd_refined 0.133 r_chiral_restr 0.082 r_symmetry_nbtor_other 0.081 r_gen_planes_refined 0.009 r_bond_refined_d 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4567 Nucleic Acid Atoms Solvent Atoms 233 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing