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Chimeric protein of crocodile allergen Cro p 1.0101 and GFP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5JZL experimental model PDB 3FS7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 0.2 M calcium acetate, 0.1 M sodium cacodylate pH 6.5, 40% v/v PEG 300
Crystal Properties Matthews coefficient Solvent content 3.26 62.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 158.778 α = 90 b = 158.778 β = 90 c = 123.498 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2021-11-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0000 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.2 40 100 0.071 0.071 0.131 0.033 0.998 17.8 15.2 26890
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.2 3.26 1.213 1.213 1.46 0.367 0.78
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.2 39.88 25312 1280 99.88 0.20078 0.19881 0.1974 0.2382 0.2378 RANDOM 110.838
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.23 0.23 -0.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 12.954 r_long_range_B_refined 9.961 r_long_range_B_other 9.959 r_dihedral_angle_2_deg 7.414 r_dihedral_angle_1_deg 6.616 r_scangle_other 6.493 r_mcangle_it 4.856 r_mcangle_other 4.855 r_scbond_it 3.99 r_scbond_other 3.99
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 12.954 r_long_range_B_refined 9.961 r_long_range_B_other 9.959 r_dihedral_angle_2_deg 7.414 r_dihedral_angle_1_deg 6.616 r_scangle_other 6.493 r_mcangle_it 4.856 r_mcangle_other 4.855 r_scbond_it 3.99 r_scbond_other 3.99 r_mcbond_it 3.005 r_mcbond_other 3.005 r_angle_refined_deg 1.26 r_angle_other_deg 0.734 r_chiral_restr 0.066 r_gen_planes_refined 0.006 r_gen_planes_other 0.006 r_bond_refined_d 0.005 r_bond_other_d 0.002 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6154 Nucleic Acid Atoms Solvent Atoms 27 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement HKL-3000 data scaling HKL-3000 data reduction MOLREP phasing