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SMARCA2 in complex with a pyridine-2-one-based inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 1 uL of protein at a concentration of 28.5 mg/ml in a buffer 25mM Hepes, 300mM NaCl, 5% glycerol, 1mM TCEP, pH 7.5 was combined with 1ul of 0.1 M HEPES, pH 7.1, 4% w/v PEG 8000
Crystal Properties Matthews coefficient Solvent content 2.45 49.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.106 α = 90 b = 63.967 β = 102.18 c = 126.575 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 PIXEL DECTRIS EIGER X 16M 2019-01-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U1 0.97919 SSRF BL17U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 47.24 86.8 0.098 0.12 0.067 0.994 8 2.7 29989
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.9 3.06 89.9 0.504 0.615 0.347 0.819 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION AB INITIO PHASING THROUGHOUT 2.9 47.24 26515 1370 79.32 0.2345 0.23179 0.2372 0.2867 0.2867 RANDOM 66.394
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 6.33 3.98 -8.17 0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.853 r_dihedral_angle_4_deg 18.926 r_dihedral_angle_3_deg 16.954 r_long_range_B_refined 7.628 r_long_range_B_other 7.622 r_dihedral_angle_1_deg 6.376 r_mcangle_it 5.17 r_mcangle_other 5.17 r_scangle_other 4.883 r_mcbond_it 3.129
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.853 r_dihedral_angle_4_deg 18.926 r_dihedral_angle_3_deg 16.954 r_long_range_B_refined 7.628 r_long_range_B_other 7.622 r_dihedral_angle_1_deg 6.376 r_mcangle_it 5.17 r_mcangle_other 5.17 r_scangle_other 4.883 r_mcbond_it 3.129 r_mcbond_other 3.128 r_scbond_it 2.849 r_scbond_other 2.846 r_angle_refined_deg 1.267 r_angle_other_deg 1.055 r_chiral_restr 0.046 r_bond_refined_d 0.003 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9522 Nucleic Acid Atoms Solvent Atoms 6 Heterogen Atoms 106
Software Software Software Name Purpose REFMAC refinement Aimless data scaling XDS data reduction