8BOY

X-ray structure of the adduct formed upon reaction of the five-coordinate Pt(II) complex, 1-Me,Me, with HEWL at pH 4.0

X-RAY DIFFRACTION

---

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	4	293	20% ethylene glycol 0.1 M sodium acetate pH 4.0 0.6 M sodium Nitrate

Crystal Properties
Matthews coefficient	Solvent content
1.97	37.52

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 77.5	α = 90
b = 77.5	β = 90
c = 37.58	γ = 90

Symmetry
Space Group	P 43 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2022-06-17	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ELETTRA BEAMLINE 11.2C	1.00	ELETTRA	11.2C

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.33	54.801	100	0.038	1	30.3	13		27087

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.33	1.35	100		1.251	0.812	2	12.7

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	193L	1.33	54.801	26864	1340	99.967	0.187	0.1854	0.2188	23.908

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.011			-0.011		0.022

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	30.808
r_dihedral_angle_4_deg	20.388
r_dihedral_angle_3_deg	14.322
r_lrange_it	6.787
r_dihedral_angle_1_deg	6.439
r_lrange_other	6.115
r_scangle_it	4.753
r_scangle_other	4.395
r_scbond_it	3.932
r_scbond_other	2.864
r_mcangle_it	2.646
r_mcangle_other	2.646
r_mcbond_it	1.896
r_mcbond_other	1.883
r_angle_refined_deg	1.763
r_angle_other_deg	1.545
r_symmetry_nbd_refined	0.279
r_symmetry_xyhbond_nbd_refined	0.273
r_xyhbond_nbd_refined	0.239
r_nbd_refined	0.224
r_nbd_other	0.213
r_symmetry_nbd_other	0.195
r_nbtor_refined	0.173
r_chiral_restr	0.089
r_symmetry_nbtor_other	0.085
r_symmetry_xyhbond_nbd_other	0.042
r_bond_refined_d	0.013
r_gen_planes_refined	0.01
r_gen_planes_other	0.002
r_bond_other_d	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	997
Nucleic Acid Atoms
Solvent Atoms	138
Heterogen Atoms	58

Software

Software
Software Name	Purpose
REFMAC	refinement
autoPROC	data reduction
autoPROC	data scaling
PHASER	phasing