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Crystal structure of human Thiosulfate sulfurtransferase amino acids 2-297
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1BOH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 291.15 PEG 6000, Tris, calcium chloride dihydrate
Crystal Properties Matthews coefficient Solvent content 2.34 47.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.93 α = 90 b = 48.543 β = 96.369 c = 152.501 γ = 90
Symmetry Space Group I 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 291 PIXEL DECTRIS PILATUS 6M 2022-03-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, DESY BEAMLINE P11 1.033200 PETRA III, DESY P11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.4 46.272 98.9 0.599 0.705 0.368 0.878 6.2 6.8 4269
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 9 46.23 0.118 0.138 0.071 0.992 6.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1BOH 3.4 46.272 4267 226 98.522 0.2 0.1956 0.1954 0.2781 0.2666 25.817
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.789 -0.006 2.08 0.693
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.492 r_dihedral_angle_3_deg 21.822 r_dihedral_angle_4_deg 18.647 r_dihedral_angle_1_deg 8.232 r_angle_refined_deg 1.576 r_lrange_it 1.439 r_lrange_other 1.438 r_angle_other_deg 1.16 r_mcangle_other 0.677 r_mcangle_it 0.676
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.492 r_dihedral_angle_3_deg 21.822 r_dihedral_angle_4_deg 18.647 r_dihedral_angle_1_deg 8.232 r_angle_refined_deg 1.576 r_lrange_it 1.439 r_lrange_other 1.438 r_angle_other_deg 1.16 r_mcangle_other 0.677 r_mcangle_it 0.676 r_scangle_it 0.557 r_scangle_other 0.557 r_mcbond_it 0.376 r_mcbond_other 0.366 r_scbond_it 0.299 r_scbond_other 0.299 r_symmetry_nbd_refined 0.287 r_nbd_other 0.285 r_nbd_refined 0.241 r_xyhbond_nbd_refined 0.216 r_symmetry_nbd_other 0.203 r_nbtor_refined 0.179 r_symmetry_nbtor_other 0.081 r_chiral_restr 0.058 r_symmetry_xyhbond_nbd_refined 0.057 r_symmetry_xyhbond_nbd_other 0.056 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2302 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing