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Vo domain of V/A-ATPase from Thermus thermophilus state2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6QUM
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 3.917 f_angle_d 0.533 f_chiral_restr 0.041 f_plane_restr 0.007 f_bond_d 0.003
Sample Vo domain of V/A-ATPase from thermus thermophilus.
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 48316 Reported Resolution (Å) 3.6 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 (6QUM) Refinement Space REAL Refinement Protocol FLEXIBLE FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 BIOQUANTUM (6k x 4k) Electron Dose (electrons/Å**2) 50
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 800 Maximum Defocus (nm) 2000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 0.105 Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION Topaz CTF CORRECTION CTFFIND 4.1.8 MODEL FITTING PHENIX 1.20 MODEL REFINEMENT ISOLDE 1.3 INITIAL EULER ASSIGNMENT RELION FINAL EULER ASSIGNMENT RELION 4.01 CLASSIFICATION RELION 4.01 RECONSTRUCTION RELION 4.01 MODEL REFINEMENT PHENIX
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 1671397