SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-1H NOESY | 2 mM DNA (5'-D(*(ADE)P*AP*CP*CP*(FGU)P*(FGU)P*TP*T)-3'), 10 mM sodium phosphate, 20 mM sodium chloride | 90% H2O/10% D2O | 44.4 mM | 7.2 | 1 atm | 293 | Agilent Direct Drive 800 |
| 2 | 2D 1H-1H COSY | 2 mM DNA (5'-D(*(ADE)P*AP*CP*CP*(FGU)P*(FGU)P*TP*T)-3'), 10 mM sodium phosphate, 20 mM sodium chloride | 90% H2O/10% D2O | 44.4 mM | 7.2 | 1 atm | 293 | Agilent Direct Drive 800 |
| 3 | 2D 1H-1H TOCSY | 2 mM DNA (5'-D(*(ADE)P*AP*CP*CP*(FGU)P*(FGU)P*TP*T)-3'), 10 mM sodium phosphate, 20 mM sodium chloride | 90% H2O/10% D2O | 44.4 mM | 7.2 | 1 atm | 293 | Agilent Direct Drive 800 |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Agilent | Direct Drive | 800 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| molecular dynamics | X-PLOR NIH | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 100 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (closest to the average) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | chemical shift assignment | NMRFAM-SPARKY | Woonghee Lee,* Marco Tonelli, and John L. Markley* | |
| 2 | structure calculation | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
| 3 | collection | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
| 4 | peak picking | NMRFAM-SPARKY | Woonghee Lee,* Marco Tonelli, and John L. Markley* | |
| 5 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
