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The Crystal Structure of SRC from Biortus.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6F3F
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.2M KNO3 HCl pH6.9, 20% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.29 46.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.204 α = 90 b = 87.468 β = 90 c = 105.802 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2023-07-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.953702 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 46.133 100 0.133 12.3 9.2 35414
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2 0.986
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.95 46.133 35414 1682 99.977 0.187 0.1847 0.1924 0.2242 0.228 28.088
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.28 -0.153 0.432
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.278 r_dihedral_angle_4_deg 15.216 r_dihedral_angle_3_deg 13.476 r_dihedral_angle_1_deg 6.893 r_lrange_it 5.684 r_lrange_other 5.562 r_scangle_it 3.561 r_scangle_other 3.56 r_mcangle_it 2.938 r_mcangle_other 2.937
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.278 r_dihedral_angle_4_deg 15.216 r_dihedral_angle_3_deg 13.476 r_dihedral_angle_1_deg 6.893 r_lrange_it 5.684 r_lrange_other 5.562 r_scangle_it 3.561 r_scangle_other 3.56 r_mcangle_it 2.938 r_mcangle_other 2.937 r_scbond_it 2.161 r_scbond_other 2.16 r_mcbond_it 1.805 r_mcbond_other 1.804 r_angle_refined_deg 1.297 r_angle_other_deg 1.254 r_symmetry_nbd_refined 0.211 r_nbd_other 0.207 r_symmetry_xyhbond_nbd_other 0.193 r_nbd_refined 0.192 r_xyhbond_nbd_refined 0.173 r_symmetry_nbd_other 0.168 r_nbtor_refined 0.167 r_symmetry_xyhbond_nbd_refined 0.159 r_symmetry_nbtor_other 0.073 r_chiral_restr 0.056 r_bond_refined_d 0.005 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3620 Nucleic Acid Atoms Solvent Atoms 414 Heterogen Atoms 38
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing