8X2S

The Crystal Structure of BPGM from Biortus

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		293	HM(P07738) 0.1M Hepes-NaOH pH 7.2, 20% PEG 6000

Crystal Properties
Matthews coefficient	Solvent content
2.42	49.12

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 38.661	α = 90
b = 61.524	β = 95.32
c = 122.802	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 9M		2022-12-21	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	CLSI BEAMLINE 08ID-1	0.953743	CLSI	08ID-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.9	43.37	99.2	0.145	7.2	4		44995

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.9	1.94	97.6		0.754	2	4.1

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1.9	43.37	44995	2189	98.975	0.189	0.1872	0.2293	25.064

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-1.353		0.47	3.573		-2.268

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	32.396
r_dihedral_angle_4_deg	14.359
r_dihedral_angle_3_deg	13.704
r_dihedral_angle_1_deg	6.285
r_lrange_it	5.31
r_lrange_other	5.112
r_scangle_it	3.198
r_scangle_other	3.198
r_mcangle_it	2.526
r_mcangle_other	2.525
r_scbond_it	1.921
r_scbond_other	1.92
r_mcbond_it	1.576
r_mcbond_other	1.575
r_angle_refined_deg	1.299
r_angle_other_deg	1.238
r_nbd_refined	0.199
r_nbd_other	0.187
r_symmetry_nbd_other	0.17
r_xyhbond_nbd_refined	0.169
r_nbtor_refined	0.155
r_symmetry_xyhbond_nbd_refined	0.151
r_symmetry_nbd_refined	0.149
r_symmetry_xyhbond_nbd_other	0.099
r_ncsr_local_group_1	0.084
r_symmetry_nbtor_other	0.073
r_chiral_restr	0.066
r_bond_refined_d	0.006
r_gen_planes_refined	0.005
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	4103
Nucleic Acid Atoms
Solvent Atoms	525
Heterogen Atoms	28

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing