X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2930.2 M Li2SO4,0.1 M NaAC pH5.5,10% PEG 1000,10% PEG 8000
Crystal Properties
Matthews coefficientSolvent content
1.8633.88

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 41.967α = 90
b = 53.686β = 90
c = 108.203γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 9M2023-04-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONCLSI BEAMLINE 08ID-10.953685CLSI08ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.736.071000.05822.512.913856
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.71.730.9493.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE1.733.0851382470499.9710.1790.17770.210130.777
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.7370.2891.449
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg15.73
r_dihedral_angle_3_deg14.373
r_lrange_it7.213
r_lrange_other7.188
r_dihedral_angle_1_deg5.974
r_scangle_it5.674
r_scangle_other5.671
r_dihedral_angle_2_deg4.585
r_scbond_it3.535
r_scbond_other3.534
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg15.73
r_dihedral_angle_3_deg14.373
r_lrange_it7.213
r_lrange_other7.188
r_dihedral_angle_1_deg5.974
r_scangle_it5.674
r_scangle_other5.671
r_dihedral_angle_2_deg4.585
r_scbond_it3.535
r_scbond_other3.534
r_mcangle_other3.235
r_mcangle_it3.232
r_mcbond_it2.375
r_mcbond_other2.349
r_angle_refined_deg1.24
r_angle_other_deg0.426
r_nbd_other0.239
r_symmetry_nbd_refined0.238
r_nbd_refined0.202
r_symmetry_nbd_other0.192
r_xyhbond_nbd_refined0.185
r_nbtor_refined0.178
r_symmetry_xyhbond_nbd_refined0.155
r_symmetry_nbtor_other0.078
r_chiral_restr0.06
r_bond_refined_d0.006
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1091
Nucleic Acid Atoms
Solvent Atoms61
Heterogen Atoms13

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing