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The Crystal Structure of Mms2 from Biortus
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1J74
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.2 M Li2SO4,0.1 M NaAC pH5.5,10% PEG 1000,10% PEG 8000
Crystal Properties Matthews coefficient Solvent content 1.86 33.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.967 α = 90 b = 53.686 β = 90 c = 108.203 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2023-04-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.953685 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 36.07 100 0.058 22.5 12.9 13856
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.73 0.949 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.7 33.085 13824 704 99.971 0.179 0.1777 0.1894 0.2101 0.2164 30.777
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.737 0.289 1.449
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.73 r_dihedral_angle_3_deg 14.373 r_lrange_it 7.213 r_lrange_other 7.188 r_dihedral_angle_1_deg 5.974 r_scangle_it 5.674 r_scangle_other 5.671 r_dihedral_angle_2_deg 4.585 r_scbond_it 3.535 r_scbond_other 3.534
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.73 r_dihedral_angle_3_deg 14.373 r_lrange_it 7.213 r_lrange_other 7.188 r_dihedral_angle_1_deg 5.974 r_scangle_it 5.674 r_scangle_other 5.671 r_dihedral_angle_2_deg 4.585 r_scbond_it 3.535 r_scbond_other 3.534 r_mcangle_other 3.235 r_mcangle_it 3.232 r_mcbond_it 2.375 r_mcbond_other 2.349 r_angle_refined_deg 1.24 r_angle_other_deg 0.426 r_nbd_other 0.239 r_symmetry_nbd_refined 0.238 r_nbd_refined 0.202 r_symmetry_nbd_other 0.192 r_xyhbond_nbd_refined 0.185 r_nbtor_refined 0.178 r_symmetry_xyhbond_nbd_refined 0.155 r_symmetry_nbtor_other 0.078 r_chiral_restr 0.06 r_bond_refined_d 0.006 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1091 Nucleic Acid Atoms Solvent Atoms 61 Heterogen Atoms 13
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing