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Structure of the C3bBb-albicin complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6RUR experimental model PDB 6XKE
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 4.994 f_angle_d 0.556 f_chiral_restr 0.044 f_bond_d 0.004 f_plane_restr 0.004
Sample complex of C3bBb with the inhibitor albicin
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK III Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 65862 Reported Resolution (Å) 3.86 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C2
Map-Model Fitting and Refinement Id 1 (6RUR, 6RUR, 6RUR, 6RUR, 6RUR, 6XKE, 6XKE) Refinement Space REAL Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 (6k x 4k) Electron Dose (electrons/Å**2) 66.7
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS GLACIOS Minimum Defocus (nm) 300 Maximum Defocus (nm) 2200 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 200 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION Gautomatch CTF CORRECTION RELION 4.0.1 MODEL FITTING UCSF ChimeraX INITIAL EULER ASSIGNMENT RELION 4,0.1 FINAL EULER ASSIGNMENT RELION 4.0.1 CLASSIFICATION RELION 4.0.1 RECONSTRUCTION cryoSPARC MODEL REFINEMENT PHENIX 1.19.2_4158:
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 492352