8TGC

Structure of Red beta C-terminal domain in complex with SSB C-terminal peptide, Form 4


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.52982.4 M ammonium phosphate dibasic, 0.1M Tris pH 8.5
Crystal Properties
Matthews coefficientSolvent content
2.1241.97

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 37.596α = 90
b = 67.895β = 90
c = 71.27γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 S 6MKB mirrors, fixed focus2020-12-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 31-ID0.979310APS31-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.48435.6663.30.0740.0820.0330.99913.45.619557
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.4841.64312.20.6990.8530.4750.5541.43.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE1.48435.661955795363.2890.2060.20290.258921.724
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.117-0.065-0.053
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.694
r_dihedral_angle_6_deg13.931
r_lrange_it7.801
r_lrange_other7.637
r_dihedral_angle_1_deg6.64
r_scangle_it5.849
r_scangle_other5.846
r_scbond_it3.621
r_scbond_other3.619
r_mcangle_it3.439
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg14.694
r_dihedral_angle_6_deg13.931
r_lrange_it7.801
r_lrange_other7.637
r_dihedral_angle_1_deg6.64
r_scangle_it5.849
r_scangle_other5.846
r_scbond_it3.621
r_scbond_other3.619
r_mcangle_it3.439
r_mcangle_other3.439
r_dihedral_angle_2_deg3.387
r_mcbond_it2.233
r_mcbond_other2.228
r_angle_refined_deg1.437
r_angle_other_deg0.492
r_symmetry_nbd_refined0.287
r_nbd_refined0.223
r_xyhbond_nbd_refined0.196
r_symmetry_nbd_other0.177
r_nbtor_refined0.175
r_symmetry_xyhbond_nbd_refined0.167
r_nbd_other0.157
r_symmetry_nbtor_other0.075
r_chiral_restr0.064
r_bond_refined_d0.007
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1258
Nucleic Acid Atoms
Solvent Atoms208
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
MOLREPphasing