8TG8

Structure of Red beta C-terminal domain in complex with SSB C-terminal peptide, Form 3


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.62981.2 M sodium citrate tribasic dihydrate, 0.1 M Tris pH 8.6
Crystal Properties
Matthews coefficientSolvent content
2.243.97

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 70.042α = 90
b = 70.042β = 90
c = 38.408γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 S 6MKB mirrors, fixed focus2020-08-05MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 31-ID0.9793APS31-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.57649.52784.60.0540.0560.016118.812.311588
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.5761.68324.32.1232.2130.6150.4731.211.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE1.57649.5271158857784.5350.2030.20110.23244.204
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.0420.042-0.084
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg16.407
r_lrange_other12.73
r_lrange_it12.679
r_dihedral_angle_6_deg12.286
r_scangle_it10.244
r_scangle_other10.233
r_dihedral_angle_1_deg7.326
r_scbond_it6.673
r_scbond_other6.663
r_mcangle_other6.024
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg16.407
r_lrange_other12.73
r_lrange_it12.679
r_dihedral_angle_6_deg12.286
r_scangle_it10.244
r_scangle_other10.233
r_dihedral_angle_1_deg7.326
r_scbond_it6.673
r_scbond_other6.663
r_mcangle_other6.024
r_mcangle_it6.008
r_dihedral_angle_2_deg5.159
r_mcbond_it4.538
r_mcbond_other4.529
r_angle_refined_deg1.632
r_angle_other_deg0.514
r_xyhbond_nbd_refined0.205
r_nbd_refined0.201
r_symmetry_nbd_other0.184
r_nbtor_refined0.18
r_nbd_other0.159
r_symmetry_nbd_refined0.117
r_symmetry_xyhbond_nbd_refined0.105
r_chiral_restr0.079
r_symmetry_nbtor_other0.078
r_bond_refined_d0.009
r_gen_planes_refined0.009
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms608
Nucleic Acid Atoms
Solvent Atoms44
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
Aimlessdata scaling
MOLREPphasing