8SXM
NMR structure of the ZNF750 zinc finger domain, Z*
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H NOESY | 1.9 mM Z*, 2.9 mM ZnSO4, 10 mM NaPO4 | 90% H2O/10% D2O | 10 mM | 5.9 | 1 atm | 288 | Bruker AVANCE 600 |
2 | 2D 1H-1H TOCSY | 1.9 mM Z*, 2.9 mM ZnSO4, 10 mM NaPO4 | 90% H2O/10% D2O | 10 mM | 5.9 | 1 atm | 288 | Bruker AVANCE 600 |
8 | 2D 1H-15N sofastHMQC | 1.9 mM Z*, 2.9 mM ZnSO4, 10 mM NaPO4 | 90% H2O/10% D2O | 10 mM | 5.9 | 1 atm | 288 | Bruker AVANCE 600 |
5 | 2D 1H-13C HSQC | 3.8 mM Z*, 4.8 mM ZnSO4, 20 mM NaPO4 | 100% D2O | 20 mM | 5.9 | 1 atm | 288 | Bruker AVANCE 600 |
6 | 2D 1H-1H NOESY | 3.8 mM Z*, 4.8 mM ZnSO4, 20 mM NaPO4 | 100% D2O | 20 mM | 5.9 | 1 atm | 288 | Bruker AVANCE 600 |
9 | 2D DQF-COSY | 3.8 mM Z*, 4.8 mM ZnSO4, 20 mM NaPO4 | 100% D2O | 20 mM | 5.9 | 1 atm | 288 | Bruker AVANCE 600 |
10 | 2D ECOSY | 3.8 mM Z*, 4.8 mM ZnSO4, 20 mM NaPO4 | 100% D2O | 20 mM | 5.9 | 1 atm | 288 | Bruker AVANCE 600 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | Structures are based on 330 NOE restraints, 12 (x2) hydrogen bonds, 4 restraints to the zinc ion, and 60 dihedral angles. | X-PLOR NIH |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | 2.1 | Bruker Biospin |
2 | peak picking | CcpNmr Analysis | 2.5.2 | Vranken, W. F., Boucher, W., Stevens, T. J., Fogh, R. H., Pajon, A., Llinas, M., Ulrich, E. L., Markley, J. L., Ionides, J., and Laue, E. D. (2005) The CCPN data model for NMR spectroscopy: development of a software pipeline. Proteins 59, 687-696 |
3 | chemical shift assignment | CcpNmr Analysis | 2.5.2 | Vranken, W. F., Boucher, W., Stevens, T. J., Fogh, R. H., Pajon, A., Llinas, M., Ulrich, E. L., Markley, J. L., Ionides, J., and Laue, E. D. (2005) The CCPN data model for NMR spectroscopy: development of a software pipeline. Proteins 59, 687-696 |
4 | structure calculation | X-PLOR NIH | Schwieters, C. D., Kuszewski, J. J., Tjandra, N., and Clore, G. M. (2003) The Xplor-NIH NMR molecular structure determination package. J Magn Reson 160, 65-73 |