8S9W

Murine S100A7/S100A15 in presence of calcium


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2930.1 M of Potassium thiocyanate, 20% PEG MME 2K and 0.01M L-Proline
Crystal Properties
Matthews coefficientSolvent content
1.9436.65

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 31.54α = 90
b = 68.4β = 90
c = 85.61γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2020-12-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 24-ID-C0.979APS24-ID-C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.6934.1699.70.070.9915.71321458
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.691.7399.30.811.65

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.6923.1920313108899.640.188230.185610.23611RANDOM38.697
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.842.27-4.12
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg26.445
r_dihedral_angle_4_deg24.216
r_dihedral_angle_3_deg13.757
r_long_range_B_refined7.668
r_long_range_B_other7.615
r_scangle_other6.272
r_dihedral_angle_1_deg5.594
r_scbond_it4.363
r_scbond_other4.289
r_mcangle_it3.848
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg26.445
r_dihedral_angle_4_deg24.216
r_dihedral_angle_3_deg13.757
r_long_range_B_refined7.668
r_long_range_B_other7.615
r_scangle_other6.272
r_dihedral_angle_1_deg5.594
r_scbond_it4.363
r_scbond_other4.289
r_mcangle_it3.848
r_mcangle_other3.846
r_mcbond_it2.964
r_mcbond_other2.926
r_angle_refined_deg1.534
r_angle_other_deg1.428
r_chiral_restr0.082
r_bond_refined_d0.009
r_gen_planes_refined0.008
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1564
Nucleic Acid Atoms
Solvent Atoms80
Heterogen Atoms37

Software

Software
Software NamePurpose
REFMACrefinement
xia2data reduction
MoRDaphasing
xia2data scaling