Find PDB structures and Computed Structure Models (CSM) by combining queries from tools in this suite: Attribute Search, Sequence Similarity, Sequence Motif, 3D Similarity, and 3D Motif with 'AND' logic.
B-A-B-form dsDNA model was generated with Web 3DNA 2.0. Portal and neck dodecamers were sourced from models refined in C12 symmetry. All input models ...
B-A-B-form dsDNA model was generated with Web 3DNA 2.0. Portal and neck dodecamers were sourced from models refined in C12 symmetry. All input models were fitted into the asymmetric map. Tunnel loops of the portal were extended into the asymmetric density.
Data Acquisition
Detector Type
GATAN K2 SUMMIT (4k x 4k)
Electron Dose (electrons/Å**2)
42
Imaging Experiment
1
Date of Experiment
Temperature (Kelvin)
Microscope Model
FEI TITAN KRIOS
Minimum Defocus (nm)
1100
Maximum Defocus (nm)
2400
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
2.7
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
FEI TITAN KRIOS AUTOGRID HOLDER
Nominal Magnification
130000
Calibrated Magnification
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
300
Imaging Details
EM Software
Task
Software Package
Version
PARTICLE SELECTION
Gautomatch
0.56
IMAGE ACQUISITION
SerialEM
CTF CORRECTION
Gctf
1.0.6
MODEL FITTING
Coot
0.9
INITIAL EULER ASSIGNMENT
RELION
3.1
FINAL EULER ASSIGNMENT
RELION
3.1
CLASSIFICATION
RELION
3.1
RECONSTRUCTION
RELION
3.1
MODEL REFINEMENT
PHENIX
1.19
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION
32222
Particle selection using cross-correlation against capsid template